Locus 6645

Sequence ID dm3.chr3L
Location 8,537,147 – 8,537,266
Length 119
Max. P 0.584555
window9150

overview

Window 0

Location 8,537,147 – 8,537,266
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 69.92
Shannon entropy 0.41669
G+C content 0.28690
Mean single sequence MFE -21.30
Consensus MFE -11.32
Energy contribution -13.11
Covariance contribution 1.79
Combinations/Pair 1.27
Mean z-score -1.65
Structure conservation index 0.53
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.19
SVM RNA-class probability 0.584555
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 8537147 119 - 24543557
AAGUAAUUAAAGACAAGUUGCAAAAUUAUCAAAGGGGGGGAUAAACAUUCCUUUUGCUACUAUCAAACUUGAAUUUAAUUAUUGGAAAUUUCAAGAGAAACAU-UUUAAAGCGAACUUUC
.((((((((((..((((((..........((((((((((......).))))))))).........))))))..)))))))))).....((((....))))...-................ ( -21.41, z-score =  -1.65, R)
>droSim1.chr3L 7979500 112 - 22553184
AUGUAAUUAAAGACAAUUUGCAAACUUAUCAAAGGGGAUGAUAAACAUUCCUUUUGCUACUAUCAAACUUGACUUUAAUUAUUGGAAAUUUUAAGAGAAACAU-UAAACAUUA-------
..((((((((((.(((((((......((.(((((((((((.....))))))))))).))....)))).))).)))))))))).....................-.........------- ( -21.40, z-score =  -3.18, R)
>droEre2.scaffold_4784 20252196 120 + 25762168
UUGCAGUUAAGAAUAUGUUCCAAUAAUAGCAUCGGGCAUGAUAAACAUUUCUGUAGCAACUAACAAAUUCAACUUAAUGUUCUGGAAUUUUUGAAGGAAGCAUGUUUAGAACGAACUUUC
.....(((..(((((((((((.......((..((((.(((.....))).))))..)).......(((((((((.....)))...)))))).....)).)))))))))..)))........ ( -21.10, z-score =  -0.11, R)
>consensus
AUGUAAUUAAAGACAAGUUGCAAAAUUAUCAAAGGGGAUGAUAAACAUUCCUUUUGCUACUAUCAAACUUGACUUUAAUUAUUGGAAAUUUUAAGAGAAACAU_UUUAAAACGAACUUUC
..(((((((((..((((((..........(((((((((((.....))))))))))).........))))))..)))))))))...................................... (-11.32 = -13.11 +   1.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:48 2011