| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,531,662 – 8,531,756 |
| Length | 94 |
| Max. P | 0.689045 |
| Location | 8,531,662 – 8,531,756 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 62.94 |
| Shannon entropy | 0.72239 |
| G+C content | 0.48413 |
| Mean single sequence MFE | -20.43 |
| Consensus MFE | -7.63 |
| Energy contribution | -7.35 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8531662 94 - 24543557 GCUGGAAAAACCCAACGGCACGAAACCAUUUUCU----CUGUUUGCAAGCCUCAUGCCGAUUGGCUGUUAUAAAAAGUUAAUAGCC----GUUCAAGUCCCC---- ...(((..(((....(((((.((((....)))).----.((....)).......)))))...((((((((........))))))))----)))....)))..---- ( -21.30, z-score = -1.38, R) >droSim1.chr3L 7973178 78 - 22553184 -------------GCUGGGAAA---CCAUUUUCU----CUGUUUGCGAGCCUCAUGCCGAUUGGCUGUUAUAAAAAGUUAAUAGCC----GUUGAAGGCCCC---- -------------(((.(.(((---(........----..)))).).))).....(((...(((((((((........))))))))----).....)))...---- ( -22.20, z-score = -1.67, R) >droSec1.super_0 810605 77 - 21120651 -------------GCUGGAAA----CCAUUUUCU----CUGUUUGCGAGCCUCAUGCCGAUUGGCUGUUAUAAAAAGUUAAUAGCC----GUUGAAGGCCCC---- -------------(((.((((----(........----..)))).).))).....(((...(((((((((........))))))))----).....)))...---- ( -19.80, z-score = -1.44, R) >droYak2.chr3L 20815188 81 + 24197627 -------------GCUGAAAAGCCCCCAUUUUCU----AUGUUUGCCAGCCUCAUGCCGAUUGGCUGUUAUAAAAAGUUAAUAGCC----GUUCAAGGCCCC---- -------------((((..((((...........----..))))..)))).....(((((.(((((((((........))))))))----).))..)))...---- ( -21.32, z-score = -2.75, R) >droAna3.scaffold_13337 15186818 81 + 23293914 -------------UUUGGAGUGGAACCAUUUUCU----CUGUUUGCUUGCCGCAUGCCGAUUGGCUGUUAUAAAAAGUUAAUAGCC----CUUCAGGCCCCC---- -------------...((.((((((.((..(...----..)..)).)).))))..(((((..((((((((........))))))))----..)).)))))..---- ( -21.50, z-score = -1.28, R) >dp4.Unknown_singleton_2637 1486 88 - 2030 ----------CAAAGCAGAACGAAGCCAUUUUCU----AUCCCUGUGAGCCUCGCUCCGAUUGGCUGUUGUAAAAUGUUAGUAGCC----GUGCAACUGCCCCCAG ----------....((((..(((.(((((.....----......))).)).)))....(..(((((((((........))))))))----)..)..))))...... ( -18.30, z-score = -0.60, R) >droPer1.super_23 1467503 88 + 1662726 ----------CAAAGCAGAACGAAGCCAUUUUCU----AUCCCUGUGAGCCUCGCUCCGAUUGGCUGUUGUAAAAUGUUAGUAGCC----GUGCAACUGCCCCCAG ----------....((((..(((.(((((.....----......))).)).)))....(..(((((((((........))))))))----)..)..))))...... ( -18.30, z-score = -0.60, R) >droWil1.scaffold_180949 5171139 85 - 6375548 ---CGGUUGCCUUCAUAAACCGUAGCCAUUUUGU----ACGCCGGUUUGCCUCACGCUGAUUGGCUGUUAAAGAAUAUUAACAACC----AUUCGA---------- ---.((((((...........)))))).......----..(((((((.((.....)).)))))))((((((......))))))...----......---------- ( -19.30, z-score = -0.77, R) >droVir3.scaffold_13049 6174282 86 - 25233164 -------------AACAAAACGUGGCCAUUUUGUACGCCUGUUUU---GCCCGAUGCCGAUUGGCUGUUAUAAAAGGACAAUAGACUGACGUGCGCUGCCCC---- -------------..(((((((.(((..........)))))))))---)..((.(((((.(..((((((..........))))).)..))).))).))....---- ( -16.50, z-score = 0.99, R) >droMoj3.scaffold_6680 4498958 87 - 24764193 -----------UCUAGAGCGCGUGGCCAUUUUGUACGCCCGUUUG---GCCAACUG-CGAUUGGCUGUUAUGAAAACAUAAUAGCCAUGUGUAUGGUUCCCC---- -----------....((((...((((((...((......))..))---))))..((-((..(((((((((((....)))))))))))..))))..))))...---- ( -30.10, z-score = -2.67, R) >droGri2.scaffold_15072 7384 84 - 214506 -------------CGAGAAACGUAGCCAUUUUGUACGCCUGUCUGUCUGCCCCACGCCGAUUGGCUGUUUU-AAGACCGAACAGCC----UUUCAAUUCCCC---- -------------.((.(..((((.........))))..).))...............((..((((((((.-......))))))))----..))........---- ( -16.10, z-score = -0.61, R) >consensus _____________AAUGGAACGUAGCCAUUUUCU____CUGUUUGCGAGCCUCAUGCCGAUUGGCUGUUAUAAAAAGUUAAUAGCC____GUUCAAGUCCCC____ ..............................................................((((((((........)))))))).................... ( -7.63 = -7.35 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:47 2011