| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,530,927 – 8,531,024 |
| Length | 97 |
| Max. P | 0.500000 |
| Location | 8,530,927 – 8,531,024 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 96.08 |
| Shannon entropy | 0.06955 |
| G+C content | 0.30722 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -17.54 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 8530927 97 + 24543557 UGUCUCACUAAGUUUUUGUUCGGUUCGCAUCGUCACUGGUGCGAUGUAAGGAAGUUUUCUACUGAAUAAUCUUAAUAUACAUACUGAUAAAUUAUAA ........((((...(((((((((((((((((....))))))))....((((....))))))))))))).))))....................... ( -19.90, z-score = -1.46, R) >droEre2.scaffold_4784 20245360 97 - 25762168 UGUCUCACUAAGUUUUUGUUUGGUUCGCAUCAUCGUUGGUGCGAUGUAUGGAAGUUUUAUACUGAAUAAUCUUAAUAUACAUACUGAUAAAUUAUAA ((((..((((((......))))))((((((((....))))))))((((((.(((..((((.....)))).)))..))))))....))))........ ( -18.20, z-score = -0.81, R) >droYak2.chr3L 20814437 97 - 24197627 UGUCUCACUAAGUUUUUGUUUGGUUCGCAUCAUCAUUGGUGCGAUGUAAGGAAGUUUUCUACUGAAUAAUCUUAAUAUACAUACUGAUAAAUUAUGA ........((((...(((((..((((((((((....))))))))....((((....))))))..))))).)))).....((((.(.....).)))). ( -19.20, z-score = -1.03, R) >droSec1.super_0 809869 97 + 21120651 UGUCUUACUAAGUUUUUGUUUGGUUCGCAUCAUCACUGGUGCGAUGUAAGGAAGUUUUCUACUGAAUAAUCUUAAUAUACAUACUGAUAAAUUAUAA (((..((.((((...(((((..((((((((((....))))))))....((((....))))))..))))).)))).)).)))................ ( -19.00, z-score = -1.45, R) >droSim1.chr3L 7971926 97 + 22553184 UGUCUCACUAAGUUUUUGUUUGGUUCGCAUCAUCACUGGUGCGAUGUAAGGAAGUUUUCUACUGAAUAAUCUUAAUAUAUAUACUGAUAAAUUAUAA ........((((...(((((..((((((((((....))))))))....((((....))))))..))))).))))....................... ( -18.20, z-score = -1.18, R) >consensus UGUCUCACUAAGUUUUUGUUUGGUUCGCAUCAUCACUGGUGCGAUGUAAGGAAGUUUUCUACUGAAUAAUCUUAAUAUACAUACUGAUAAAUUAUAA ........((((...(((((((((((((((((....))))))))....((((....))))))))))))).))))....................... (-17.54 = -17.62 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:46 2011