| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,520,050 – 8,520,163 |
| Length | 113 |
| Max. P | 0.909484 |
| Location | 8,520,050 – 8,520,163 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.55 |
| Shannon entropy | 0.26836 |
| G+C content | 0.51973 |
| Mean single sequence MFE | -37.00 |
| Consensus MFE | -26.58 |
| Energy contribution | -28.50 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8520050 113 + 24543557 AGCCUCGUUCCGUACGGAUUUGAUCCAAUCGGAUUGGAUC--CGUAGCUGUCCAUUCGGAUUCCGAGACCGAGUCCGAAUCUGAAUCCGACGUGAUUGACCUCAGCUUAGUCUAG----- ............((((((((..((((....))))..))))--))))(((((((((((((((((.((...((....))..)).)))))))).)))...)))...))).........----- ( -38.30, z-score = -2.15, R) >droSim1.chr3L 7961221 113 + 22553184 AGCCUCGUUCCGUACGGAUUUGAUCCAAUCGGAUUGGAUC--CGUAGCUGUCCAUUCGGAUUCCGAGACCGAGUCCGAAUCUGAAUCCGACGUGAUUGACCUCAGCUUAGUCUAA----- ............((((((((..((((....))))..))))--))))(((((((((((((((((.((...((....))..)).)))))))).)))...)))...))).........----- ( -38.30, z-score = -2.21, R) >droSec1.super_0 799133 100 + 21120651 AGCCUCGUUCCGUACGGAUUUGAUCCAAUCGGAUUGGAUC--CGUAGCUGUCCAUUCGGAUUCCGAGACCGAGUCCGAAUCUGAAUCCGACGUGAUUGACCU------------------ ....(((.((((((((((((..((((....))))..))))--)))).........((((((((.((...((....))..)).)))))))))).)).)))...------------------ ( -36.60, z-score = -2.44, R) >droYak2.chr3L 20803792 114 - 24197627 AGCCUCGUCCCGUACGGAUUUGAUCCAAUCGGAUUGGAUCCCCGUAGCUGUCCAUUCGGAUUCCGA------GUUCGGUUUCGAAUCCGACGUGAUUGACCUCAGCUCAGCUUAGUCUAG (((............(((((..((((....))))..)))))..(.((((((((((((((((((.((------(......))))))))))).)))...)))...))))).)))........ ( -34.70, z-score = -1.18, R) >droEre2.scaffold_4784 20234815 101 - 25762168 AGCCUCGUCCCGUACGGAUUUGAUCCAAUCGGAUUGGAUC--CGUAGCUGUCCAUUCGGAUUCCGA------GUCCG------AAUCCGACGUGAGUGACCUCAGCUUAGUCUAG----- (((..((((...((((((((..((((....))))..))))--)))).......((((((((.....------)))))------)))..))))((((....)))))))........----- ( -37.10, z-score = -3.03, R) >consensus AGCCUCGUUCCGUACGGAUUUGAUCCAAUCGGAUUGGAUC__CGUAGCUGUCCAUUCGGAUUCCGAGACCGAGUCCGAAUCUGAAUCCGACGUGAUUGACCUCAGCUUAGUCUAG_____ ....(((.(((((.(((((((((((((((...)))))))).............((((((((((.......))))))))))..)))))))))).)).)))..................... (-26.58 = -28.50 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:45 2011