Locus 6641

Sequence ID dm3.chr3L
Location 8,508,020 – 8,508,101
Length 81
Max. P 0.951875
window9146

overview

Window 6

Location 8,508,020 – 8,508,101
Length 81
Sequences 5
Columns 81
Reading direction reverse
Mean pairwise identity 83.46
Shannon entropy 0.30071
G+C content 0.50988
Mean single sequence MFE -24.80
Consensus MFE -17.76
Energy contribution -18.92
Covariance contribution 1.16
Combinations/Pair 1.13
Mean z-score -2.27
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.58
SVM RNA-class probability 0.951875
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 8508020 81 - 24543557
GAUCCCACCACACCACCCAAGGAGUGGUGAAUAGAGGGUUUAGCCACCAUGCUCUUGUGACAGCAUAUUUCUCACACGAAG
.....((((((.((......)).))))))....((((((......)))(((((........)))))....)))........ ( -21.10, z-score =  -1.47, R)
>droEre2.scaffold_4784 20220968 81 + 25762168
GAUCACACCACACCACCCAAGGUGUGGUGAAUAGAGGGUCAAACCACCAUGCCCUUGUGCCAGUAUAUUUAUCAGAUGGAG
.(((.(((((((((......)))))))))....(((((.((........)))))))..................))).... ( -25.50, z-score =  -2.02, R)
>droYak2.chr3L 20791503 70 + 24197627
GAUCCCACCACACCACCCAAGGUGUGGUGAAUA-----------CACACUGCCCUUGUGCCAGUAUAUUUAACAGUUGGAG
..((((((((((((......))))))))).(((-----------(.(((.......)))...))))...........))). ( -22.30, z-score =  -2.53, R)
>droSec1.super_0 787179 81 - 21120651
GAUCCCACCACACCACCCAAGGUGUGGUGAAUAGAGGGUAUAGCCACCAAGCUCUUGUGCCAGUAUAUCUCUCACACAGAG
.....(((((((((......)))))))))....(..((.....))..)...((((((((..((.....))..)))).)))) ( -26.20, z-score =  -2.59, R)
>droSim1.chr3L 7947828 81 - 22553184
GAUCCCACCACACCACCCAAGGUGUGGUGAAUAGAGGGCUUAGCCAGCAUGCUCUUGUGCCAGUAUAUUUCUCACACGGAG
..((((((((((((......)))))))))....((((((...))).((((......))))..........)))....))). ( -28.90, z-score =  -2.73, R)
>consensus
GAUCCCACCACACCACCCAAGGUGUGGUGAAUAGAGGGUUUAGCCACCAUGCUCUUGUGCCAGUAUAUUUCUCACACGGAG
.....(((((((((......)))))))))....((((((...........))))))......................... (-17.76 = -18.92 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:44 2011