| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,497,036 – 8,497,133 |
| Length | 97 |
| Max. P | 0.520770 |
| Location | 8,497,036 – 8,497,133 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 56.79 |
| Shannon entropy | 0.60902 |
| G+C content | 0.31291 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -2.13 |
| Energy contribution | -3.80 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.44 |
| Mean z-score | -3.17 |
| Structure conservation index | 0.10 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8497036 97 - 24543557 GCCUUAAAACUUUAUCAGUUUCACAAAAGAUCGUUGAAAAGACUUACAUGAGUCGAGCCAAUGAUUUAGACAAAAUCUAAUA----GAAAC-----UACAC----CAAAA- ................((((((......((((((((....(((((....)))))....))))))))((((.....))))...----)))))-----)....----.....- ( -19.30, z-score = -3.59, R) >dp4.Unknown_group_548 1577 103 + 13788 CUCCUUAAACUUUAUCUUCUAUAUAAAAAGACUUUGAAAAAAGCUACCUUAGUAGAGCUAUGGACCUCGAUAAAGUAUAGAA----AAAAUAAAAGGACAC----CAAAAC .(((((..((((((((............((.((((....)))))).((.(((.....))).)).....)))))))).((...----....)).)))))...----...... ( -17.30, z-score = -1.96, R) >droMoj3.scaffold_6373 4747 110 + 138745 UUAAUGAAAGCGUAUCUAUUGUACAAGCGUACACUAAAAAACGGUAUCUAAGUCGUGCAAACGAUUUAGAUAAAGUUUAAAAUCCGAACAUUAUCUGACAUAUUGCAGAA- .(((((.............(((((....))))).....((((..((((((((((((....))))))))))))..))))..........)))))((((.(.....))))).- ( -28.20, z-score = -3.97, R) >consensus CUCAUAAAACUUUAUCUAUUAUACAAAAGAACAUUGAAAAAAGCUACCUAAGUCGAGCAAACGAUUUAGAUAAAGUAUAAAA____AAAAU_A___GACAC____CAAAA_ ...............................................(((((((((....))))))))).......................................... ( -2.13 = -3.80 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:43 2011