| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,615,802 – 4,615,868 |
| Length | 66 |
| Max. P | 0.868691 |
| Location | 4,615,802 – 4,615,868 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 96.06 |
| Shannon entropy | 0.06940 |
| G+C content | 0.40000 |
| Mean single sequence MFE | -13.84 |
| Consensus MFE | -12.78 |
| Energy contribution | -13.02 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.838088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4615802 66 + 23011544 AUUUCAAGCUGAGGAAACGUGAAAUCUUUCUCGGAACUUUGAGAAACACAUUUCGCAAACCACUAA ............(....)(((((((.((((((((....))))))))...))))))).......... ( -14.10, z-score = -1.97, R) >droEre2.scaffold_4929 4694275 66 + 26641161 AUUUCGAGCUGAGGAAACGUAAAAUCUUUCUCGGAACUUUGAGAAACACAUUUCGCAACCCACUAA .((((((.((((((((..........))))))))....))))))...................... ( -10.40, z-score = -0.47, R) >droYak2.chr2L 4629380 66 + 22324452 AUUUCAAGCUGAGGAAACGUGAAAUCUUUCUCGGAACUUCGAGAAACACAUUUCGCAACCCACUAA ............(....)(((((((.((((((((....))))))))...))))))).......... ( -16.10, z-score = -2.60, R) >droSec1.super_5 2701180 66 + 5866729 AUUUCAAGCUGCGGAAACGUGAAAUCUUUCUGGGAACUUUGAGAAACACAUUUCGCAACCCACUAA .........(((((((..(((...((((...(....)...))))..))).)))))))......... ( -13.10, z-score = -1.24, R) >droSim1.chr2L 4495851 66 + 22036055 AUUUCAAGCUGCGGAAACGUGAAAUCUUUCUCGGAACUUUGAGAAACACAUUUCGCAACCCACUAA .......((.(((....)))(((((.((((((((....))))))))...))))))).......... ( -15.50, z-score = -2.54, R) >consensus AUUUCAAGCUGAGGAAACGUGAAAUCUUUCUCGGAACUUUGAGAAACACAUUUCGCAACCCACUAA ............(....)(((((((.((((((((....))))))))...))))))).......... (-12.78 = -13.02 + 0.24)
| Location | 4,615,802 – 4,615,868 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 96.06 |
| Shannon entropy | 0.06940 |
| G+C content | 0.40000 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -15.14 |
| Energy contribution | -15.22 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4615802 66 - 23011544 UUAGUGGUUUGCGAAAUGUGUUUCUCAAAGUUCCGAGAAAGAUUUCACGUUUCCUCAGCUUGAAAU .....((((...((((((((((((((........)))))).....))))))))...))))...... ( -13.70, z-score = -1.00, R) >droEre2.scaffold_4929 4694275 66 - 26641161 UUAGUGGGUUGCGAAAUGUGUUUCUCAAAGUUCCGAGAAAGAUUUUACGUUUCCUCAGCUCGAAAU ....(((((((.((((((((((((((........)))))).....))))))))..))))))).... ( -18.30, z-score = -2.51, R) >droYak2.chr2L 4629380 66 - 22324452 UUAGUGGGUUGCGAAAUGUGUUUCUCGAAGUUCCGAGAAAGAUUUCACGUUUCCUCAGCUUGAAAU .....((((((.(((((((((((((((......))))))).....))))))))..))))))..... ( -20.00, z-score = -2.69, R) >droSec1.super_5 2701180 66 - 5866729 UUAGUGGGUUGCGAAAUGUGUUUCUCAAAGUUCCCAGAAAGAUUUCACGUUUCCGCAGCUUGAAAU .....(((((((((((((((..(((..............)))...))))))).))))))))..... ( -17.74, z-score = -2.30, R) >droSim1.chr2L 4495851 66 - 22036055 UUAGUGGGUUGCGAAAUGUGUUUCUCAAAGUUCCGAGAAAGAUUUCACGUUUCCGCAGCUUGAAAU .....(((((((((((((((((((((........)))))).....))))))).))))))))..... ( -21.60, z-score = -3.44, R) >consensus UUAGUGGGUUGCGAAAUGUGUUUCUCAAAGUUCCGAGAAAGAUUUCACGUUUCCUCAGCUUGAAAU .....((((((.((((((((((((((........)))))).....))))))))..))))))..... (-15.14 = -15.22 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:54 2011