| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,452,519 – 8,452,606 |
| Length | 87 |
| Max. P | 0.602402 |
| Location | 8,452,519 – 8,452,606 |
|---|---|
| Length | 87 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 64.37 |
| Shannon entropy | 0.62389 |
| G+C content | 0.32292 |
| Mean single sequence MFE | -15.09 |
| Consensus MFE | -3.94 |
| Energy contribution | -4.22 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8452519 87 - 24543557 CUUUACAUCGUGUAUAGUUUCAAACAAAAAUGUUUCAAAAAC-----UAUAUAAUAUUCGAAAGGUUUCCAAGUAGGUUACCCUAUCGAAUC ..........((((((((((.(((((....)))))...))))-----))))))..((((((..(((..((.....))..)))...)))))). ( -19.80, z-score = -4.37, R) >droSim1.chr3L 7910745 74 - 22553184 CUUUACAUCGUGUAUAG-------------UGUUUCAAAAAC-----UAUAUAAUAUUCGAAAGGUUUCCAAGUAGAUUUCCCUAUCGAAUC ..........(((((((-------------(.........))-----))))))..((((((.(((..((......))....))).)))))). ( -13.60, z-score = -2.54, R) >droYak2.chr3L 20752149 92 + 24197627 CCAUGCAUCUUGCAUAGUUUCAAAUGCAUCUAUUUCAAAAACUACUUUAUAUAAUAUUUGAAAGGUUCCCAAGUGGGUUUCCCUAUCGAAUC ..((((((.(((........)))))))))..........................((((((.(((..(((....)))....))).)))))). ( -15.80, z-score = -1.44, R) >droEre2.scaffold_4784 20181626 87 + 25762168 CCAUACAUCAUCUAUAGUAUCAAACACAUCUAUUUCAAAAAC-----UAUGUAAUAUUUGGAAGGUUCCCAAGUAGGUUUUCCUAUCGAAUC (((.........((((((......................))-----)))).......)))..(((((....(((((....))))).))))) ( -9.04, z-score = 0.25, R) >droAna3.scaffold_13337 15124175 78 + 23293914 UUUUCCACCACUGAUGAU---------AAGAGAAGUAGAAAC---CCUAUUUUUUUUAUGGAAAAAU--AAAACUGGCAACACUGUCGAGUC ((((((....(....)((---------(((((((((((....---.)))))))))))))))))))..--...(((((((....)))).))). ( -17.20, z-score = -2.48, R) >consensus CUUUACAUCAUGUAUAGU_UCAAA___AACUGUUUCAAAAAC_____UAUAUAAUAUUUGAAAGGUUCCCAAGUAGGUUUCCCUAUCGAAUC .......................................................((((((.(((..((......))....))).)))))). ( -3.94 = -4.22 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:40 2011