| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,445,396 – 8,445,492 |
| Length | 96 |
| Max. P | 0.778621 |
| Location | 8,445,396 – 8,445,492 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 89.68 |
| Shannon entropy | 0.17458 |
| G+C content | 0.45959 |
| Mean single sequence MFE | -24.59 |
| Consensus MFE | -20.74 |
| Energy contribution | -21.38 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8445396 96 - 24543557 GAACACCACAAAUCCGAAUAUGAGCGACAAUAGCAAAGCAACGGAUU-AGGGGCACGCGCCCCCCGGUUUUCUAAUUGCUUUGGGAUACCAUUGGAA .....(((..((((((.......((.......)).......))))))-.(((((....)))))..(((.((((((.....)))))).)))..))).. ( -28.14, z-score = -1.90, R) >droEre2.scaffold_4784 20174819 92 + 25762168 GAACAGCAGAAAUCCGAAUAUGAGCGACAAUAGCAA-----CGGAUUAAUGGGCACACGCCCCCCGUAUGUCUAAUUGCUUUGGGAUCCCAUUGAAA ....(((((.((((((..(((........)))....-----))))))..((((((.(((.....))).)))))).))))).(((....)))...... ( -21.10, z-score = -0.58, R) >droYak2.chr3L 20745141 90 + 24197627 GAACAGCAAAAAUCCGAAUAUGAGCGACAAUAGCAA-----CGGAUU-AUGGGCACACG-CCCCCGUUUGUCUAAUUGCUUUGGGAUCCCAUUGAAA ....(((((.((((((..(((........)))....-----))))))-.((((((.(((-....))).)))))).))))).(((....)))...... ( -21.40, z-score = -0.82, R) >droSec1.super_0 741252 96 - 21120651 GAACACCAGAAAUCCGAAUAUGAGCGACAAUAGCAAAUCAACGGAUU-AGGGGCACACGCCCUCCGGUUUUCUAAUUACUUUGGGAUACCAUUGAAA (((.(((...((((((...((..((.......))..))...))))))-.(((((....)))))..))).)))......(..(((....)))..)... ( -25.00, z-score = -2.46, R) >droSim1.chr3L 7903659 96 - 22553184 GAACACCAGAAAUCCGAAUAUGAGCGACAAUAGCAAAUCAACGGAUU-AGGGGCACACGCCCCCCGGUUUUCUAAUUACUUUGGGAUACCAUUGAAA (((.(((...((((((...((..((.......))..))...))))))-.(((((....)))))..))).)))......(..(((....)))..)... ( -27.30, z-score = -3.05, R) >consensus GAACACCAGAAAUCCGAAUAUGAGCGACAAUAGCAAA_CAACGGAUU_AGGGGCACACGCCCCCCGGUUUUCUAAUUGCUUUGGGAUACCAUUGAAA (((.(((...((((((.......((.......)).......))))))..(((((....)))))..))).)))......(..(((....)))..)... (-20.74 = -21.38 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:38 2011