| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,439,873 – 8,439,975 |
| Length | 102 |
| Max. P | 0.880676 |
| Location | 8,439,873 – 8,439,975 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.22 |
| Shannon entropy | 0.39248 |
| G+C content | 0.36368 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -7.75 |
| Energy contribution | -9.22 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8439873 102 + 24543557 UCUCACGUGCCCUC-CAAUCACCAUUGAUUAACCAUUAAUGGAA-AUUCACAA-UCAACUGCCAUUGCU----AUUCAAAUUCAA-AUUCAAAUUUGAGCAAUGGCACGU ....((((......-......((((((((.....))))))))..-........-......((((((((.----..(((((((...-.....))))))))))))))))))) ( -26.60, z-score = -4.89, R) >droSim1.chr3L 7898073 105 + 22553184 UCUCACGUGCCCUC-CAAUCACCAUUGAUUAACCAUUAAUGGAA-AUUCACAA-UCAACUGCCAUUGCUCGAUAUUCAAAUUCAA-AUUCAAAUUUGAGCAGUGGCACG- .....(((......-......((((((((.....))))))))..-........-......((((((((((((.(((..(((....-)))..))))))))))))))))))- ( -27.00, z-score = -4.64, R) >droSec1.super_0 735703 105 + 21120651 UCUCACGUGACCUC-CAAUCACCAUUGAUUAACCAUUAAUGGAA-AUUCACAA-UCAACUGCCAUUGCUCGAUAUUCAAAUUCAA-AUUCAAAUUUGAGCAAUGGCAUG- ......((((....-..((..((((((((.....))))))))..-))))))..-.....(((((((((((((.(((..(((....-)))..))))))))))))))))..- ( -27.70, z-score = -4.88, R) >droYak2.chr3L 20739365 105 - 24197627 UCUCACGUGCCCUC-CAAUCACCAUUGAUUAACCAUUAAUGGAA-AUUCACAA-UCAACUGCCAUUGCUAGAUAUUCAAAUUCAA-AUUCGAAUUCGAGCACAGGCAAC- ......(((.....-.(((..((((((((.....))))))))..-))))))..-.....((((..((((.((.((((.(((....-))).)))))).))))..))))..- ( -19.90, z-score = -2.44, R) >droEre2.scaffold_4784 20169239 95 - 25762168 UCUCACGUGCCCUC-CAAUCACCAUUGAUUACCCAUUAAUGGAA-AUUCACAA-UCAACUGCCAUCGAU----AUUCAAAUUCAA-AUUUGUGCACAGGCAAC------- .......((((...-......((((((((.....))))))))..-...(((((-...............----............-..)))))....))))..------- ( -13.85, z-score = -0.77, R) >droWil1.scaffold_180955 887950 105 - 2875958 UCUCACGUGCUAAAGCAAUCAGCAUUGAUUAAUCAUUAAUGGAAUAUUUACAAAUCGAUUUUAAAUAGA----AUAGAAAUUCUAUAUAACAUUUUGAAUGGACGCAAU- ......((((((..........(((((((.....))))))).............((((..(((.(((((----((....))))))).)))....)))).))).)))...- ( -14.40, z-score = -0.24, R) >consensus UCUCACGUGCCCUC_CAAUCACCAUUGAUUAACCAUUAAUGGAA_AUUCACAA_UCAACUGCCAUUGCU____AUUCAAAUUCAA_AUUCAAAUUUGAGCAAUGGCAAG_ .....................((((((((.....)))))))).................((((.(((((............................))))).))))... ( -7.75 = -9.22 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:36 2011