Locus 6630

Sequence ID dm3.chr3L
Location 8,391,998 – 8,392,056
Length 58
Max. P 0.995572
window9128

overview

Window 8

Location 8,391,998 – 8,392,056
Length 58
Sequences 5
Columns 65
Reading direction reverse
Mean pairwise identity 81.86
Shannon entropy 0.29531
G+C content 0.36201
Mean single sequence MFE -15.84
Consensus MFE -11.43
Energy contribution -12.07
Covariance contribution 0.64
Combinations/Pair 1.25
Mean z-score -3.14
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.82
SVM RNA-class probability 0.995572
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 8391998 58 - 24543557
GUAAGUAGCUGACGGAUGCAAA-------UUUUUUCGUUAGCUGGAAAACUCAUUUUCCACUUAU
((((((((((((((((......-------....))))))))))((((((....)))))))))))) ( -20.20, z-score =  -5.05, R)
>droYak2.chr3L 20691149 55 + 24197627
---AAUAGCUGACAAAUGCAAA-------UUUUUUGGUUUGCUGGAAAACUCAUUUUCCGCUUAU
---...(((........(((((-------((....))))))).((((((....)))))))))... ( -12.40, z-score =  -2.13, R)
>droEre2.scaffold_4784 20121496 61 + 25762168
---AAUAGCUGGCGAAUGCACAACUUGUGUUUAGCUGUUAGCUGGAAAACUCA-UUUCCACUUAU
---...((((((((...((((.....)))).....))))))))(((((.....-)))))...... ( -16.30, z-score =  -2.13, R)
>droSec1.super_0 688038 55 - 21120651
---AGUAGCUGACGGAUGCAAA-------UUUUUUCCUUAGCUGGAAAACGCAUUUUUCACUUAU
---.((((.(((..(((((...-------..((((((......)))))).)))))..))).)))) ( -13.40, z-score =  -2.43, R)
>droSim1.chr3L 7852177 55 - 22553184
---AGUAGCUGACGGAUGCAAA-------UUUUUUCGUUAGCUGGAAAACUCAUUUUCCACUUAU
---...((((((((((......-------....))))))))))((((((....))))))...... ( -16.90, z-score =  -3.98, R)
>consensus
___AGUAGCUGACGGAUGCAAA_______UUUUUUCGUUAGCUGGAAAACUCAUUUUCCACUUAU
......((((((((((.................))))))))))((((((....))))))...... (-11.43 = -12.07 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:29 2011