| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,611,709 – 4,611,812 |
| Length | 103 |
| Max. P | 0.574291 |
| Location | 4,611,709 – 4,611,812 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 63.23 |
| Shannon entropy | 0.77398 |
| G+C content | 0.39605 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -5.56 |
| Energy contribution | -4.97 |
| Covariance contribution | -0.59 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4611709 103 - 23011544 GCUUCCUAAGUUCAUAUACU---UAUAGAUAUAUGUU----UUUGUUAUAGCUUUUGCUGUUCAUUGAUGUGAGACGGUAAUGUCUACCGCCCAUCGAAGGUCGAACAGC--------- (((...((((..((((((..---......))))))..----))))....)))....(((((((.((((((.(.(.(((((.....))))))))))))).....)))))))--------- ( -26.60, z-score = -2.21, R) >droSim1.chr2L 4491769 107 - 22036055 GCUUCCUAAGUCCAUAUACU---UAUAGAUAUAUGUA----UUUGCUAUAGCUUUUGCUGUUCAUUGAUGUGAGACGGUAAUGUCUACCGCCCAUCGAAGGUCGAACAGCAACA----- (((...(((((.((((((..---......)))))).)----))))....)))..(((((((((.((((((.(.(.(((((.....))))))))))))).....)))))))))..----- ( -30.10, z-score = -2.79, R) >droSec1.super_5 2697182 107 - 5866729 GCUUCCUAAGUCCAUAUACU---UAUAGAUAUAUGUA----UUUGUUAUAGCUUUUGCUGUUCAUUGAUGUGAGACGGUAAUGUCUACCGCCCAUCGAAGGUCGAACAGCAACA----- (((...(((((.((((((..---......)))))).)----))))....)))..(((((((((.((((((.(.(.(((((.....))))))))))))).....)))))))))..----- ( -30.10, z-score = -2.97, R) >droYak2.chr2L 4625183 110 - 22324452 GCUUCCUAAGUCCAUAUAUU---UAUAGAUAUAUGUAU-UUUUUGUUUUAGCUUUUGCUGUUCAUUGAUGUGAGACGGUAAUGUCUACCGCCCAUCGAAGGUCGAACAGUAACA----- (((....((((.((((((((---....)))))))).))-))........)))..(((((((((.((((((.(.(.(((((.....))))))))))))).....)))))))))..----- ( -28.70, z-score = -3.06, R) >droEre2.scaffold_4929 4690276 111 - 26641161 GCUUCCUAAGUACAUAUAUU---UAUAGAUAUACAUAUGUAUUUGCUAAAGCUUUUGCUGUUCAUUGAUGUGAGACGUUAAUGUCUACCGCCCAUCGAAGGUCGAACAGUAAUA----- ((((..(((((((((((...---...........)))))))))))...))))..(((((((((.((((((..(((((....)))))......)))))).....)))))))))..----- ( -27.24, z-score = -2.41, R) >droAna3.scaffold_12943 1804141 99 + 5039921 --------GUUUCUUAGAGC---UUUGCGUAUUUAUU----UUUACUAUAGCUUUUGCUGUUCAUUGAUGUGAGACGGUAAUGUCUGCCGCCCCCCGAAGGUCACACAGUAACU----- --------.......(((((---(.((.(((......----..))))).))))))....(((.((((.(((((..(((((.....))))).((......)))))))))))))).----- ( -19.90, z-score = -0.21, R) >dp4.chr4_group3 455484 114 + 11692001 GUUUCUCGGAUAUAUAGUACCAAUGUACAUAUAUGUACACACUAUGUAUAGCUUUUGCUGCUCAUUGAUGUGCGACGGUAAUGUCUGCCGCCCCUCGAAGGUCGAACAGUUACU----- .....(((.(((((((((((....)))).))))))).(((((.(((..((((....))))..))).).))))))).((((((.((.(((..........))).))...))))))----- ( -27.20, z-score = -0.28, R) >droPer1.super_8 1493753 114 + 3966273 GUUUCUCGGAUAUAUAGUACCAAUGUACAUAUAUGUACACACUAUGUAUAGCUUUUGCUGCUCAUUGAUGUGCGACGGUAAUGUCUGCCGCCCCUCGAAGGUCGAACAGUUACU----- .....(((.(((((((((((....)))).))))))).(((((.(((..((((....))))..))).).))))))).((((((.((.(((..........))).))...))))))----- ( -27.20, z-score = -0.28, R) >droWil1.scaffold_180703 1348956 84 + 3946847 -----------------GUCUCAUUCAGUUAUUUUUUG-CGCUUACUUAAC--UUUGAUGUCCAUUGAAGCGGGACGCUAGUGUCUACCGCCCCUUGAAGGUCA--------------- -----------------...(((...(((((.......-........))))--).)))((.((.((.(((.(((.((.(((...))).)))))))).)))).))--------------- ( -15.16, z-score = 0.58, R) >droVir3.scaffold_12963 8518938 101 + 20206255 -------------GUCUGCCAUUUUUUUUCUCUUCUUA-CAAUUUAUACG---UUUGCUGUCCAUUGAAGCAGCACGGUAAUAUCUACCGCCCCUUGAAGGUCAGCAAAAAA-AUAAAU -------------.........................-..((((((...---(((((((.((.((.(((..((..((((.....))))))..))).)))).)))))))...-)))))) ( -22.20, z-score = -2.99, R) >droMoj3.scaffold_6500 11978254 100 + 32352404 -------------GUCUGCCAUUUUUUCU-UCUUAUUU-CAAUUUCUAUGUUUUUUGCUGUCCGUUCAAGCAGCACGGUAAUAUCUACCGCCCCUUGAAGGUCGGCAAAAAA-AUA--- -------------................-........-...........((((((((((.((.((((((..((..((((.....))))))..)))))))).))))))))))-...--- ( -26.00, z-score = -4.42, R) >droGri2.scaffold_15126 3158033 105 + 8399593 -------------ACCUGCUAUUUUUAUGCUUGUCUUA-AAAUGUAUAUAUUUGUUGCUGUCCAUUGAAGCAGCACGGUAAUGUCUACCGCCCCUUGAAGGUCGAUAAAAAAUAUAUAU -------------((..((.........))..))....-....((((((((((((((((.........)))))).......((((.(((..........))).))))..)))))))))) ( -19.20, z-score = -0.82, R) >consensus G_UUC___AGU_CAUAUACC___UAUAGAUAUAUGUA__CAUUUGCUAUAGCUUUUGCUGUUCAUUGAUGUGAGACGGUAAUGUCUACCGCCCCUCGAAGGUCGAACAGUAACA_____ ................................................................((((..(((..(((((.....)))))....)))....)))).............. ( -5.56 = -4.97 + -0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:53 2011