| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,391,226 – 8,391,328 |
| Length | 102 |
| Max. P | 0.650375 |
| Location | 8,391,226 – 8,391,328 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 61.83 |
| Shannon entropy | 0.66677 |
| G+C content | 0.52346 |
| Mean single sequence MFE | -19.77 |
| Consensus MFE | -7.66 |
| Energy contribution | -8.26 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8391226 102 + 24543557 --GACCAUCCCCGCUCCCACAUACCCAUUAGCCUGGUGGUGGGCCUGGUACCCAAACCUAUUUCUGUGCUUGGGCUACA--GUCGCAUUCGCGAUUCCGUCGUCAU --(((((..(((((..(((..............)))..)))))..))((((((((.((.......).).))))).)))(--(((((....))))))..)))..... ( -29.04, z-score = -0.57, R) >droSim1.chr3L 7851379 93 + 22553184 --GACCACCCCCAA--CCAGAUACCCAUUAACCCACCACCA-------UACCCAAACCUAUUUCUGUGCUUGGGCAACA--GUCGCAUUCGCGAUUCCGUCGUCAU --(((.((.(((((--(((((....................-------..............)))).).)))))....(--(((((....))))))..)).))).. ( -17.98, z-score = -2.94, R) >droSec1.super_0 687253 93 + 21120651 --GACCACCCCCUA--CCAGAUACCCAUUAACCCACCACCA-------UACCCAAACCUAUUUCUGUGCUUGGGCAACA--GUCGCAUUCGCGAUUCCGUCGUCAU --(((.((.(((..--(((((....................-------..............)))).)...)))....(--(((((....))))))..)).))).. ( -14.98, z-score = -1.69, R) >droYak2.chr3L 20690340 99 - 24197627 UAGCCCCAUACCUUACCCACUAACCCAC-AGCAUGCCCACA---CCAAACAGCAAACUUAUUUCGGUGCUUGGGCUCC---GUCGCAUUCGCGAUUCCAUCGUCGC ............................-.((..(((((((---((..................))))..)))))...---(((((....))))).........)) ( -18.37, z-score = -0.67, R) >droAna3.scaffold_13337 15891465 89 - 23293914 ---------AACAAUACCUUAAACCCAU--GGGUACCCGCAU------CAUUUGAAUUCAGAUUUUUGUUUAGAGAGCCUCGAAGCACUCGCGGUUCGGCUGUCAA ---------.....(((((.........--))))).(((((.------.(((((....)))))...))).....(((((.(((.....))).)))))))....... ( -18.50, z-score = -0.19, R) >consensus __GACCACCCCCAA__CCACAUACCCAUUAGCCUACCACCA_______UACCCAAACCUAUUUCUGUGCUUGGGCAACA__GUCGCAUUCGCGAUUCCGUCGUCAU ........................................................................(((.((...(((((....)))))...)).))).. ( -7.66 = -8.26 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:28 2011