| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,370,258 – 8,370,353 |
| Length | 95 |
| Max. P | 0.532893 |
| Location | 8,370,258 – 8,370,353 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 87.89 |
| Shannon entropy | 0.23217 |
| G+C content | 0.45750 |
| Mean single sequence MFE | -17.95 |
| Consensus MFE | -13.72 |
| Energy contribution | -13.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8370258 95 - 24543557 ACACCACAUAAUCCCCAUUGAGAGGUGUU--UUCCUCGAGUCUCGAGAUCAUUUCGCCACUCAUUCGGUGCUCCUCUAUUCAAAACAACACUCGCAG-- .((((................((((....--..))))((((..(((((...)))))..))))....))))...........................-- ( -19.00, z-score = -1.86, R) >droSim1.chr3L 7829942 95 - 22553184 ACACCACAUAAUCCCCAUUGAGAGGUGUU--UUCCUCGAGUCUCGAGAUCAUUUCGCCACUCAUUCGGUGCUCCUCUAUUCAAAACAACACUCGCAG-- .((((................((((....--..))))((((..(((((...)))))..))))....))))...........................-- ( -19.00, z-score = -1.86, R) >droSec1.super_0 666349 95 - 21120651 ACACCACAUAAUCCCCAUUGAGAGGUGUU--UUCCUCGAGUCUCGAGAUCAUUUCGCCACUCAUUCGGUGCUCCUCUAUUCAAAACAACACUCGCAG-- .((((................((((....--..))))((((..(((((...)))))..))))....))))...........................-- ( -19.00, z-score = -1.86, R) >droYak2.chr3L 20669538 95 + 24197627 ACACCACAUAAUCCCCAAUAAGAGGUGUU--UUCCUCGAGUCUCGAGAUCAAUUCGCCACUCAUUCGCCGCUGCUCUAUUCAAAACAACACUUGCAG-- .....................((((....--..))))((((..((((.....))))..))))........((((...................))))-- ( -14.81, z-score = -1.16, R) >droEre2.scaffold_4784 20101607 95 + 25762168 GUACCACAUAAUCCCCAUUAAGAGGUGUU--UUCCUCGAGUCUCGAGAUCAUUUCGCCACUCAUUCGGUGCUCCUCUAUUCAAAACAACACUUGCAG-- (((((................((((....--..))))((((..(((((...)))))..))))....)))))..........................-- ( -20.70, z-score = -3.05, R) >droAna3.scaffold_13337 15870932 98 + 23293914 -AAAUCUGUAAUCCCCAUUCAAAGGUGUUUCUUCUAUGGGUUUCGAGAUCAUUUCGCUACUCAUUCGAUGCUUGUCUAGUCAAAACAACACUCAUGGCC -.............((((.....((((((......((((((..(((((...)))))..))))))..(((....)))..........)))))).)))).. ( -15.20, z-score = 0.22, R) >consensus ACACCACAUAAUCCCCAUUGAGAGGUGUU__UUCCUCGAGUCUCGAGAUCAUUUCGCCACUCAUUCGGUGCUCCUCUAUUCAAAACAACACUCGCAG__ .((((................((((........))))((((..(((((...)))))..))))....))))............................. (-13.72 = -13.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:26 2011