Locus 6626

Sequence ID dm3.chr3L
Location 8,358,667 – 8,358,764
Length 97
Max. P 0.933509
window9123

overview

Window 3

Location 8,358,667 – 8,358,764
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 85.57
Shannon entropy 0.25840
G+C content 0.52528
Mean single sequence MFE -34.26
Consensus MFE -27.97
Energy contribution -28.28
Covariance contribution 0.31
Combinations/Pair 1.13
Mean z-score -1.97
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.38
SVM RNA-class probability 0.933509
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 8358667 97 + 24543557
UCCGUGCAGUUUUGAAAGCAUCAUGGUUUGUUUGGCGAGGAAGGAACCGUGUAGC-CAUGGAAUCGUGGAACCGGGCAACCUUCGCUUUCGAAGCACU
...((((...(((((((((..((((((((.(((......))).))))))))...(-((((....)))))....((....))...))))))))))))). ( -35.80, z-score =  -2.17, R)
>droSim1.chr3L 7818896 98 + 22553184
UCCGUGCAGUUUUGAAAGCAUCAUGGUUUGUUUGGCGAGGAAGGAACCGUGUAGCGCAUGGAACCGUGGAACCGGGCAACCUUCGCUUUCGAAGCACU
...((((...(((((((((.(((((((((.....(((..(..(....)...)..)))...)))))))))....((....))...))))))))))))). ( -34.70, z-score =  -1.39, R)
>droSec1.super_0 655024 98 + 21120651
UCCGUGCAGUUUUGAAAGCAUCAUGGUUUGUUUGUCGAGGAAGGAACCGUGUAGCGCAUGGAACCGUGGAACCGGGCAACCUUCGCUUUCGAAGCACU
...((((...(((((((((..((((((((.(((......))).)))))))).....((((....))))(((..((....)))))))))))))))))). ( -34.60, z-score =  -1.65, R)
>droYak2.chr3L 20657703 74 - 24197627
UCCGUGCAGUUUUGAAAGCAUCAUGGUUUGUGUGGCGAGGAAGGAAC------AC-AGCGGA-----------------CCUUCGCUUUCGAAGCACU
...((((...(((((((((.....((((((((((............)------))-).))))-----------------))...))))))))))))). ( -25.40, z-score =  -1.71, R)
>droEre2.scaffold_4784 20089996 97 - 25762168
UCCGUGCAGUUUUGAAAGCAUCAUGGUUUGUUUGGCGAGGAAGGAAUCGCGGAAC-CGCGGAACCGUGGAACCGGGCAACCUUCGCUUUCGAAGCACU
...((((...(((((((((.....(((((((((.((((........)))).))))-((((....)))))))))((....))...))))))))))))). ( -40.80, z-score =  -2.91, R)
>consensus
UCCGUGCAGUUUUGAAAGCAUCAUGGUUUGUUUGGCGAGGAAGGAACCGUGUAGC_CAUGGAACCGUGGAACCGGGCAACCUUCGCUUUCGAAGCACU
...((((...(((((((((.......((((.....))))(((((..(((((.....)))))..(((......)))....)))))))))))))))))). (-27.97 = -28.28 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:25 2011