| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,339,279 – 8,339,331 |
| Length | 52 |
| Max. P | 0.644711 |
| Location | 8,339,279 – 8,339,331 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 95.00 |
| Shannon entropy | 0.08378 |
| G+C content | 0.51538 |
| Mean single sequence MFE | -14.14 |
| Consensus MFE | -12.50 |
| Energy contribution | -12.94 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8339279 52 + 24543557 GUAGCAGAGUAUUUGGCAACACUGGCGGGGUAUUAUGUCACGGCGAUGACAC ((..((.(((((((.((.......)).))))))).))..))........... ( -10.90, z-score = -0.37, R) >droEre2.scaffold_4784 20070477 52 - 25762168 AUGACAGAGUAUUUUGCAACACUGGCGGGGUAUUAUGUCACGGCGAUGUCAC .(((((.((((((((((.......)))))))))).))))).(((...))).. ( -14.20, z-score = -1.81, R) >droYak2.chr3L 20638302 52 - 24197627 AUGGCAGAGUAUUUUGCAACACUGGCGGGGUAUUAUGUCACGGCGAUGUCAC .(((((.((((((((((.......)))))))))).))))).(((...))).. ( -13.60, z-score = -1.35, R) >droSec1.super_0 635861 52 + 21120651 GUGGCAGAGUAUUUGGCAACACUGGCGGGGUAUUAUGUCACGGCGAUGACAC ((((((.(((((((.((.......)).))))))).))))))........... ( -16.00, z-score = -2.36, R) >droSim1.chr3L 7799167 52 + 22553184 GUGGCAGAGUAUUUGGCAACACUGGCGGGGUAUUAUGUCACGGCGAUGACAC ((((((.(((((((.((.......)).))))))).))))))........... ( -16.00, z-score = -2.36, R) >consensus GUGGCAGAGUAUUUGGCAACACUGGCGGGGUAUUAUGUCACGGCGAUGACAC ((((((.((((((..((.......))..)))))).))))))........... (-12.50 = -12.94 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:23 2011