| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,334,132 – 8,334,223 |
| Length | 91 |
| Max. P | 0.856485 |
| Location | 8,334,132 – 8,334,223 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 64.64 |
| Shannon entropy | 0.71557 |
| G+C content | 0.36389 |
| Mean single sequence MFE | -16.78 |
| Consensus MFE | -5.95 |
| Energy contribution | -5.87 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.856485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8334132 91 + 24543557 UAUAUAAUUGUUUAAAUAUAUUCGCAACGCG-AACUGAUUUCACAUAUCAAGGUCAGUAAGUUGACGACUCG-CAGCAACA----ACA-AUAACAAAC---------- ......((((((.........((((...)))-)((((((((.........))))))))..((((.((...))-))))...)----)))-)).......---------- ( -14.60, z-score = -1.34, R) >droGri2.scaffold_15110 14385379 89 - 24565398 CAUAUUUUCGUG-------GGUCG-------CAGCUGAUUUCACAUAUCAAGGUCAGUAAGGUGGCAGAAAUUGAACAAAAUGCAAAAAAAAAAAAAAGAUAA----- ((...((((...-------.((((-------(.((((((((.........))))))))...))))).)))).)).............................----- ( -14.60, z-score = -1.20, R) >droMoj3.scaffold_6680 3129138 91 + 24764193 CAUAUUUUCGUG-------GGUCG-------CAGCUGAUUUCACACAUCAAGGUCAGUAAGGUGGCAAAAAAAAUUGUAAA-AUUACA-ACAAAAAUCAAAAUAAAC- ..((((((.((.-------.((((-------(.((((((((.........))))))))...)))))........(((((..-..))))-).....)).))))))...- ( -15.50, z-score = -2.50, R) >droVir3.scaffold_13049 4731743 89 + 25233164 CAUAUUUUCGUG-------GGUCG-------CAGCUGAUUUCACAUAUCAAGGUCAGUAAGGUGGCAAAAGUAAAAAUAAAUAUUACAUAUAAUAAACAACAA----- ..((((((..(.-------.((((-------(.((((((((.........))))))))...)))))....)..))))))........................----- ( -15.30, z-score = -2.62, R) >droWil1.scaffold_180949 1303990 104 + 6375548 CAUAUUUUCGUGU-UGUGGGGCCAGCAGC-UCAGCUGAUUUCACAUAUCAAGGUCAGUAAGGUGGCGGCGAAACAAUUGCA-AUUACG-AGAAAUACCAUUAUCAAAC ....(((((((((-((..(.(((.((.((-(..((((((((.........))))))))..))).))))).......)..))-).))))-))))............... ( -26.30, z-score = -1.65, R) >droPer1.super_33 832479 83 + 967471 UAUAUAUUCGU---GGGGCAGCAGCAACA-GCAGCUGAUUUCACAUAUCAAGGUCAGUAAGGUGGCGAUUUGCAAACAAAA----AAA-AAC---------------- .......((((---(..(((((.((....-)).)))).)..)))........((((......)))))).............----...-...---------------- ( -17.00, z-score = -1.70, R) >dp4.chrXR_group6 12808032 83 + 13314419 UAUAUAUUCGU---GGGGCAGCAGCAACA-GCAGCUGAUUUCACAUAUCAAGGUCAGUAAGGUGGCGAUUUGCAAACAAAA----AAA-AAC---------------- .......((((---(..(((((.((....-)).)))).)..)))........((((......)))))).............----...-...---------------- ( -17.00, z-score = -1.70, R) >droAna3.scaffold_13337 10277116 93 + 23293914 UAUAUAUUCGUUGAUAUAAAUUCGCCACCAGCAGCUGAUUUCGCAAAUCAAGGUCAGUAAGGUGGGCGCUCGACAGGCAAA----CAA-ACAAUAACC---------- .........((((..........((((((....((((((((.........))))))))..))).)))(((.....)))...----...-.))))....---------- ( -18.20, z-score = -0.57, R) >droEre2.scaffold_4784 20065339 91 - 25762168 UAUAUAAUUGUUUAAAUAUAUUCGCAAAGUG-AGCUGAUUUCACAUAUCAAGGUCAGUAAGUGGAUGACUCG-CAGCAAAA----ACA-AUAACAAAC---------- ......(((((((........((((...)))-)((((..(((((.(((........))).))))).......-))))..))----)))-)).......---------- ( -14.60, z-score = -0.88, R) >droYak2.chr3L 20633169 91 - 24197627 UAUAUUAUUGUUUAAAUAUAUUCGCAAAGCG-AGCUGAUUUCACAUAUCAAGGUCAGUAAGUUGACGACUCG-CAGCAGAA----ACA-AUAACAAAC---------- ....(((((((((........((((...)))-)((((((((.........))))))))..((((.((...))-))))..))----)))-)))).....---------- ( -18.50, z-score = -2.34, R) >droSec1.super_0 618856 91 + 21120651 UAUAUAAUUGUUUAAAUAUAUUCGCAACGCG-AGCUGAUUUCACAUAUCAAGGUCAGUAAGUUGACGACUCG-CAGCAACA----ACA-AUAACAAAC---------- ......((((((.........((((...)))-)((((((((.........))))))))..((((.((...))-))))...)----)))-)).......---------- ( -14.90, z-score = -1.03, R) >droSim1.chr3L 7794010 91 + 22553184 UAUAUAAUUGUUUAAAUAUAUUCGCAACGCG-AGCUGAUUUCACAUAUCAAGGUCAGUAAGUUGACGACUCG-CAGCAACA----ACA-AUAACAAAC---------- ......((((((.........((((...)))-)((((((((.........))))))))..((((.((...))-))))...)----)))-)).......---------- ( -14.90, z-score = -1.03, R) >consensus UAUAUAUUCGUUU_AAUAUAGUCGCAACG_GCAGCUGAUUUCACAUAUCAAGGUCAGUAAGGUGGCGACUCG_CAGCAAAA____ACA_AUAACAAAC__________ .................................((((((((.........)))))))).................................................. ( -5.95 = -5.87 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:22 2011