| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,285,258 – 8,285,349 |
| Length | 91 |
| Max. P | 0.923856 |
| Location | 8,285,258 – 8,285,349 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 76.25 |
| Shannon entropy | 0.46980 |
| G+C content | 0.42622 |
| Mean single sequence MFE | -20.74 |
| Consensus MFE | -10.60 |
| Energy contribution | -10.89 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8285258 91 + 24543557 CACGGAGUCCCAUUCCAAUUUCGACCGCCUAGCAAUUGAGUUGGCAAAAG-ACUGGCCUAAUGGCCAUCAUUAUACAACGGUUGUAUAACAG ...(((((...))))).....((((((((.(((......))))))....(-(.(((((....)))))))..........)))))........ ( -26.10, z-score = -2.71, R) >droSim1.chr3L 7744507 91 + 22553184 CACGAAGUCCCAUUCCAAUUUCGACCGCCUAGCAAUUGAGUUGGCAAAAG-ACUGGCCUAAUGGCCAUCAUUAUACAACAGUUGUAUAACAG ..((((((.........))))))...(((.(((......))))))....(-(.(((((....))))))).(((((((.....)))))))... ( -23.30, z-score = -2.86, R) >droSec1.super_0 566038 91 + 21120651 CACGGAGUCCCAUUCCAAUUUCGACCGCCUAGCAAUUGAGUUGGCAAAAG-ACUGGCCUAAUGGCCAUCAUUAUACAACAGUUGUAUAACAG ...(((((...)))))..........(((.(((......))))))....(-(.(((((....))))))).(((((((.....)))))))... ( -23.70, z-score = -2.40, R) >droYak2.chr3L 20583497 91 - 24197627 CACGGACUUCCAUUCCAAUUUCGACUGCCUAGCAAUUGAGUCGGCAAAAG-ACUGGCCUAAUGGCCAUCAUUAUACAACAGUUGUAUAACAG ...(((.......)))........(((....(((((((((((.......)-)))((((....))))............)))))))....))) ( -22.00, z-score = -2.13, R) >droEre2.scaffold_4784 20010715 91 - 25762168 CACGGACUUCCAUUCCAAUUUCGACUGCCUAGCAAUUGAGUCGGCAAAAG-ACUGGCCUAAUGGCCAUCAUUAUACAACAGUUGUAUAACAG ...(((.......)))........(((....(((((((((((.......)-)))((((....))))............)))))))....))) ( -22.00, z-score = -2.13, R) >droAna3.scaffold_13337 19851536 85 + 23293914 ------CUUGGACCACAACUACGUUUAGCUCCCGAUUAAGCUGC-AGAAACCCCAAUCUAAUGGCCUUCAUUAUUCAACAGUUGUAUAACAG ------..((....((((((.....(((((........))))).-.(((...(((......)))..)))..........))))))....)). ( -12.00, z-score = -0.21, R) >droWil1.scaffold_180698 2245630 82 + 11422946 ---------GUCAGAUUGUUAGACUUA-UUCUCAGUUUAGCUGUUAAAAACGUUUGCCUAAUGGCAUUCAUUAUUCAACAGUUGUAUAACAG ---------.......(((((((((..-.....))))((((((((((.((.(..((((....))))..).)).)).))))))))..))))). ( -16.10, z-score = -1.69, R) >consensus CACGGACUCCCAUUCCAAUUUCGACUGCCUAGCAAUUGAGUUGGCAAAAG_ACUGGCCUAAUGGCCAUCAUUAUACAACAGUUGUAUAACAG ..........................(((.............)))........(((((....)))))...(((((((.....)))))))... (-10.60 = -10.89 + 0.29)
| Location | 8,285,258 – 8,285,349 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 76.25 |
| Shannon entropy | 0.46980 |
| G+C content | 0.42622 |
| Mean single sequence MFE | -23.24 |
| Consensus MFE | -12.58 |
| Energy contribution | -12.65 |
| Covariance contribution | 0.07 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8285258 91 - 24543557 CUGUUAUACAACCGUUGUAUAAUGAUGGCCAUUAGGCCAGU-CUUUUGCCAACUCAAUUGCUAGGCGGUCGAAAUUGGAAUGGGACUCCGUG ..((((((((.....))))))))..(((((....)))))((-(((...((((.((.(((((...))))).))..))))...)))))...... ( -26.50, z-score = -1.50, R) >droSim1.chr3L 7744507 91 - 22553184 CUGUUAUACAACUGUUGUAUAAUGAUGGCCAUUAGGCCAGU-CUUUUGCCAACUCAAUUGCUAGGCGGUCGAAAUUGGAAUGGGACUUCGUG ..((((((((.....))))))))..(((((....)))))((-(((...((((.((.(((((...))))).))..))))...)))))...... ( -26.50, z-score = -1.90, R) >droSec1.super_0 566038 91 - 21120651 CUGUUAUACAACUGUUGUAUAAUGAUGGCCAUUAGGCCAGU-CUUUUGCCAACUCAAUUGCUAGGCGGUCGAAAUUGGAAUGGGACUCCGUG ..((((((((.....))))))))..(((((....)))))((-(((...((((.((.(((((...))))).))..))))...)))))...... ( -26.50, z-score = -1.66, R) >droYak2.chr3L 20583497 91 + 24197627 CUGUUAUACAACUGUUGUAUAAUGAUGGCCAUUAGGCCAGU-CUUUUGCCGACUCAAUUGCUAGGCAGUCGAAAUUGGAAUGGAAGUCCGUG ..((((((((.....))))))))(((((((....))))).)-).....((((.((.(((((...))))).))..)))).((((....)))). ( -24.00, z-score = -1.10, R) >droEre2.scaffold_4784 20010715 91 + 25762168 CUGUUAUACAACUGUUGUAUAAUGAUGGCCAUUAGGCCAGU-CUUUUGCCGACUCAAUUGCUAGGCAGUCGAAAUUGGAAUGGAAGUCCGUG ..((((((((.....))))))))(((((((....))))).)-).....((((.((.(((((...))))).))..)))).((((....)))). ( -24.00, z-score = -1.10, R) >droAna3.scaffold_13337 19851536 85 - 23293914 CUGUUAUACAACUGUUGAAUAAUGAAGGCCAUUAGAUUGGGGUUUCU-GCAGCUUAAUCGGGAGCUAAACGUAGUUGUGGUCCAAG------ .((...((((((((..............(((......)))(((((((-(.(......))))))))).....))))))))...))..------ ( -17.10, z-score = 0.50, R) >droWil1.scaffold_180698 2245630 82 - 11422946 CUGUUAUACAACUGUUGAAUAAUGAAUGCCAUUAGGCAAACGUUUUUAACAGCUAAACUGAGAA-UAAGUCUAACAAUCUGAC--------- .(((((.((..((((((((.((((..((((....))))..))))))))))))((......))..-...)).))))).......--------- ( -18.10, z-score = -2.85, R) >consensus CUGUUAUACAACUGUUGUAUAAUGAUGGCCAUUAGGCCAGU_CUUUUGCCAACUCAAUUGCUAGGCAGUCGAAAUUGGAAUGGAACUCCGUG ..((((((((.....))))))))..(((((....)))))......(((((.............)))))........................ (-12.58 = -12.65 + 0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:21 2011