| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,283,299 – 8,283,350 |
| Length | 51 |
| Max. P | 0.700673 |
| Location | 8,283,299 – 8,283,350 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 97.39 |
| Shannon entropy | 0.03601 |
| G+C content | 0.33333 |
| Mean single sequence MFE | -9.20 |
| Consensus MFE | -9.20 |
| Energy contribution | -9.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.01 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8283299 51 + 24543557 AGUUUAAAUCUAAAAACGCAAUGUUGUACAUAUCUUGGCCAUUAUUGCCGU .((((........))))((((((.((..((.....))..)).))))))... ( -9.20, z-score = -1.50, R) >droSim1.chr3L 7742589 51 + 22553184 AGUUUAAAUCUAAAAACGCAAUGUUGUACAUAUGUUGGCCAUUAUUGCCGU .((((........))))((((((.((..((.....))..)).))))))... ( -9.20, z-score = -0.84, R) >droSec1.super_0 564129 51 + 21120651 AGUUUAAAUCAAAAAACGCAAUGUUGUACAUAUGUUGGCCAUUAUUGCCGU .((((........))))((((((.((..((.....))..)).))))))... ( -9.20, z-score = -0.70, R) >consensus AGUUUAAAUCUAAAAACGCAAUGUUGUACAUAUGUUGGCCAUUAUUGCCGU .((((........))))((((((.((..((.....))..)).))))))... ( -9.20 = -9.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:19 2011