| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,265,247 – 8,265,302 |
| Length | 55 |
| Max. P | 0.637362 |
| Location | 8,265,247 – 8,265,302 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 63.92 |
| Shannon entropy | 0.62025 |
| G+C content | 0.49772 |
| Mean single sequence MFE | -8.80 |
| Consensus MFE | -4.62 |
| Energy contribution | -4.62 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.60 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.637362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8265247 55 + 24543557 GCCGAUUUUCGCAACAACGC---CACCGUUUUUUGCCUCCCCCCA---UAGAAAACGGUUU ..........((......))---.(((((((((((..........---))))))))))).. ( -9.80, z-score = -1.80, R) >droGri2.scaffold_15110 21030660 60 - 24565398 -UCAGUUUCUUCUGCAUUAUAUUCCCCAUCUGUGGCUGCCACAAAGUUUUAUACACAGUUU -.(((......)))...............(((((...((......))......)))))... ( -5.30, z-score = 0.39, R) >droEre2.scaffold_4784 19990474 51 - 25762168 GCCGAUUUUCGCGACACUA-----ACCGUUUUUGCCCCCCGCCCA---UC-AAAGCGUUU- ..........((((.((..-----...))..))))....(((...---..-...)))...- ( -3.60, z-score = 0.71, R) >droYak2.chr3L 20562708 52 - 24197627 GUCGAUUUUCGCGACACUA-----ACCGUUUUUGGGC-CCCUCCA---ACGAAAACGGUUU ((((.......))))...(-----((((((((((...-.......---.))))))))))). ( -16.10, z-score = -2.36, R) >droSim1.chr3L 7723974 53 + 22553184 GCCGAUUUUCGCGACACCAC---CACCGUUUUUUGCC--CCCCCA---UGGAAAACGGUUU ((........))........---.((((((((..(..--......---)..)))))))).. ( -9.20, z-score = -0.64, R) >consensus GCCGAUUUUCGCGACACUA____CACCGUUUUUGGCC_CCCCCCA___UCGAAAACGGUUU ........................((((((((((...............)))))))))).. ( -4.62 = -4.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:15 2011