Locus 6616

Sequence ID	dm3.chr3L
Location	8,256,104 – 8,256,222
Length	118
Max. P	0.555983

overview

Window 0

Location	8,256,104 – 8,256,222
Length	118
Sequences	14
Columns	118
Reading direction	reverse
Mean pairwise identity	88.72
Shannon entropy	0.27882
G+C content	0.55085
Mean single sequence MFE	-42.66
Consensus MFE	-29.14
Energy contribution	-29.88
Covariance contribution	0.74
Combinations/Pair	1.41
Mean z-score	-1.73
Structure conservation index	0.68
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.13
SVM RNA-class probability	0.555983
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 8256104 118 - 24543557
CACCGAUAUGUUGGCACCGGAUGUCCUUGAGCUAUGCACGGCAACGUUGUUUGGCCAUUAAGGACAACAUGCCGCAUCGAAUGCUUCUCCACGUUGAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((((.(((((....)).))).))))..)))))))))(((.((((((((.((((........)))))))))..)))))).)).)))).. ( -43.00, z-score =  -2.07, R)
>droSec1.super_0 537015 118 - 21120651
CACCGAUAUGUUGGCACCGGAUGUCCUUGAGCUAUGCACGGCAACGUUGUUUGGCCAUUAAGGACAACAUGCCGCAUCGAAUGCUUCUCCACGUUGAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((((.(((((....)).))).))))..)))))))))(((.((((((((.((((........)))))))))..)))))).)).)))).. ( -43.00, z-score =  -2.07, R)
>droYak2.chr3L 20553405 118 + 24197627
CACCGAUAUGUUGGCACCGGAUGUCCUUGAGCUAUGCACGGCAACGUUGUUUGGCCAUUAAGGACAACAUGCCGCAUCGAAUGCUUCUCCACGUUGAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((((.(((((....)).))).))))..)))))))))(((.((((((((.((((........)))))))))..)))))).)).)))).. ( -43.00, z-score =  -2.07, R)
>droEre2.scaffold_4784 19980394 118 + 25762168
CACCGAUAUGUUGGCACCGGAUGUCCUUGAGCUAUGCACGGCAACGUUGUUUGGCCAUUAAGGACAACAUGCCGCAUCGAAUGCUUCUCCACGUUGAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((((.(((((....)).))).))))..)))))))))(((.((((((((.((((........)))))))))..)))))).)).)))).. ( -43.00, z-score =  -2.07, R)
>droAna3.scaffold_13337 3257398 118 - 23293914
CACCGAUAUGUUGGCACCGGAUGUCCUUGAGCUAUGCACGGCAACGUUGUUUGGCCAUUAAGGACAACAUGCCGCAUCGAAUGCUUCUCCACGUUGAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((((.(((((....)).))).))))..)))))))))(((.((((((((.((((........)))))))))..)))))).)).)))).. ( -43.00, z-score =  -2.07, R)
>dp4.chrXR_group3a 1409673 118 + 1468910
CACCGAUAUGUUGGCACCGGAUGUCCUUGAGCUAUGCACGGCAACGUUGUUUGGCCAUUAAGGACAACAUGCCGCAUCGAAUGCUUCUCCACGUUGAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((((.(((((....)).))).))))..)))))))))(((.((((((((.((((........)))))))))..)))))).)).)))).. ( -43.00, z-score =  -2.07, R)
>droPer1.super_23 1602360 118 + 1662726
CACCGAUAUGUUGGCACCGGAUGUCCUUGAGCUAUGCACGGCAACGUUGUUUGGCCAUUAAGGACAACAUGCCGCAUCGAAUGCUUCUCCACGUUGAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((((.(((((....)).))).))))..)))))))))(((.((((((((.((((........)))))))))..)))))).)).)))).. ( -43.00, z-score =  -2.07, R)
>droSim1.chr3L 7714996 118 - 22553184
CACCGAUAUGUUGGCACCGGAUGUCCUUGAGCUAUGCACGGCAACGUUGUUUGGCCAUUAAGGACAACAUGCCGCAUCGAAUGCUUCUCCACGUUGAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((((.(((((....)).))).))))..)))))))))(((.((((((((.((((........)))))))))..)))))).)).)))).. ( -43.00, z-score =  -2.07, R)
>droWil1.scaffold_180698 2210698 118 - 11422946
CACCGAUAUGUUGGCACCGGAUGUCCUUGAGCUAUGCACGGCAACGUUGUUUGGCCAUUAAGGACAACAUGCCGCAUCGAAUGCUUCUCCACGUUGAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((((.(((((....)).))).))))..)))))))))(((.((((((((.((((........)))))))))..)))))).)).)))).. ( -43.00, z-score =  -2.07, R)
>droMoj3.scaffold_6654 1339157 118 - 2564135
CACCGAUAGGUUGGCACUGGAUGUCCUUGAGCAAUGCAGGGCAACGUUGUUUGGCCAUUAAGGACGACAUGCCGCAUCGAAUGCUUCUCGACGUUAAUGCGCGGCUGUACCAUGCCCU
.(((....))).((((.(((.(((((((((((...(((((....).))))...))..)))))))))(((.(((((.((((.......)))).((....)))))))))).))))))).. ( -43.40, z-score =  -1.68, R)
>droVir3.scaffold_13049 22685860 118 + 25233164
CACCGAUAUGUCGGCACCGGAUGUCCUUGAGCAAUGCACGGCAACGUUGUUUGGCCAUUAAGGACGACAUGCCGCAUCGAAUGCUUCUCGACGUUAAUGCGUGGCUGUACCAUGCCCU
.......(((((((((...(.(((((((((((...(((((....)).)))...))..))))))))).).))))((((...)))).....)))))....((((((.....))))))... ( -40.30, z-score =  -1.14, R)
>droGri2.scaffold_15110 21019440 118 + 24565398
CACCGAUAUGUCGGCACCGGAUGUCCUUGAGCAAUGCACGGCAACGUUGUUUGGCCAUUAAGGACGACAUGCCGCAUCGAAUGCUUCUCAACAUUAAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((...(((((....)).)))...))..)))))))))(((.(((((....((((........)))).....)))))))).)).)))).. ( -39.60, z-score =  -1.34, R)
>anoGam1.chr2L 41964710 118 - 48795086
CACCGGUAGGUCGGUACCGGGUGGCCCUGGGCGACGCAGGGCAGCGUGACCGGUGCAUUCACCACCACGUGCUUGAGCGAAUGUUUCUCCACGUUAAUUCUAGGUUGUACUAGUCCCU
....(((.(((..(((((((((.(((((((....).)))))).))....)))))))....))))))(((((...((((....))))...))))).....((((......))))..... ( -42.40, z-score =   0.04, R)
>triCas2.ChLG7 14244088 118 + 17478683
CAGUAGUAUCCAGGAACAGGAUGUCCUUGCGCGACGCACGGCAGCGUGACGUCCUCCCCCAGGACCACCCUCCUGGCAUUGUACUUGUCCACGCUGAUCCGUGGCUGGACGUUGCCCU
..((((..(((((..((.((((..((.((((...)))).))((((((((((.......((((((......)))))).........))).)))))))))))))..)))))..))))... ( -44.49, z-score =  -1.43, R)
>consensus
CACCGAUAUGUUGGCACCGGAUGUCCUUGAGCUAUGCACGGCAACGUUGUUUGGCCAUUAAGGACAACAUGCCGCAUCGAAUGCUUCUCCACGUUGAUGCGCGGCUGUACCAUGCCCU
............((((..((.(((((((((((...(((((....))).))...))..)))))))))(((.(((((....((((........)))).....)))))))).)).)))).. (-29.14 = -29.88 +   0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:14 2011