| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,243,399 – 8,243,506 |
| Length | 107 |
| Max. P | 0.523993 |
| Location | 8,243,399 – 8,243,506 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 75.83 |
| Shannon entropy | 0.46289 |
| G+C content | 0.55090 |
| Mean single sequence MFE | -41.62 |
| Consensus MFE | -23.06 |
| Energy contribution | -24.95 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8243399 107 - 24543557 CAGAGCAACUCCCAGGGGCGGACUUUGCGGGAAGUAAGCAAUCUCCUGG-AAUGGGCUAUCUUAGCCAAAAAGCCAGGGGAUUCUUGGAUGGCUUUCUUGCAGUGCCA ....((..(.....)..))((...((((((((((((((.((((((((((-....(((((...)))))......))))))))))))))......))))))))))..)). ( -39.70, z-score = -0.88, R) >droAna3.scaffold_13337 3243886 101 - 23293914 CAUAGAGGCUCACAGGAGCGGAAUUUGAGGGAUCGUAGCCAUCUGUAGG-----AGGCGUCUUACUC--GAAUCCAGGGGAUUCUUGUCAGAUUCACUUUGUGGGAAG (((((((((((....)))).((((((((((((.(((..((.......))-----..)))))))....--((((((...))))))...)))))))).)))))))..... ( -34.70, z-score = -2.09, R) >droEre2.scaffold_4784 19967508 105 + 25762168 AGCCGCAGCUCCCAGGGGCGGACUUUGCGGGAUGUAAGCCAUCUCUUGG-AAAGGGCUAUCUUAGCC-AAAAGCCAGGGGAUUC-UGGCUGGCUUUCUUGCUUUUCCG .......((((....))))(((....((((((.((.(((((((((((((-....(((((...)))))-.....))))))))...-))))).))..))))))...))). ( -43.80, z-score = -1.37, R) >droYak2.chr3L 20538697 107 + 24197627 AGCCGCAGCUCCCAGGGGCGGACUUUGCGGGAAGUAAGCAAUCUCCUGGCAAAGGGCUAUCUUAGCC-AAAAGCCAGGGGAUUCUUGGCUGGCUUUCUGGCUGCUCCA ....(((((...(((((.....)))))((((((((.((((((((((((((....(((((...)))))-....)))))))))))....))).))))))))))))).... ( -49.80, z-score = -1.82, R) >droSec1.super_0 524242 99 - 21120651 -GCAGCAGCUCCAAGGGCGCGACUUUCCGGGAAGAAGGCAAUCCCUCGA-AA--GGCUAUCUUAGCCAAAAAG-CAGGGGAU--CUGGCU-GCUUUCU-GCUGUGCCA -(((.(((((((..(((........))).)))(((((((((((((..(.-..--(((((...)))))......-)..)))))--.....)-)))))))-))))))).. ( -34.10, z-score = 0.45, R) >droSim1.chr3L 7702002 107 - 22553184 GGCAGCAGCUCCCAGGGGCGGACUUUGCGGGAAGUAAGCAAUCUCUUGG-AAAGGGCUAUCUUAGCCAAAAAGCCAGGGGAUUCUUGGCUGGCUUUCUGGCUGUGCCA ((((.((((...(((((.....)))))((((((((.(((((((((((((-....(((((...)))))......))))))))))....))).)))))))))))))))). ( -47.60, z-score = -1.91, R) >consensus AGCAGCAGCUCCCAGGGGCGGACUUUGCGGGAAGUAAGCAAUCUCUUGG_AAAGGGCUAUCUUAGCC_AAAAGCCAGGGGAUUCUUGGCUGGCUUUCUUGCUGUGCCA ....((.((((....)))).........(((((((.(((.(((((((((.....(((((...)))))......))))))))).....))).))))))).))....... (-23.06 = -24.95 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:11 2011