| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,240,263 – 8,240,354 |
| Length | 91 |
| Max. P | 0.613997 |
| Location | 8,240,263 – 8,240,354 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 83.90 |
| Shannon entropy | 0.30922 |
| G+C content | 0.52754 |
| Mean single sequence MFE | -16.12 |
| Consensus MFE | -9.74 |
| Energy contribution | -10.68 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8240263 91 + 24543557 UUUCAGCAGCAGCAUUUUCCCCCCGUGACUUUCCC-AUUCAUUUCCCGCCCAUUU-GCUGGCUGUCCCACAGCCAUUGUCUGUUGUUCCAGCA ....((((((((((.....................-...........((......-))((((((.....)))))).)).))))))))...... ( -19.60, z-score = -2.86, R) >droSim1.chr3L 7698995 91 + 22553184 UUUCAGCAGCAGCACUUUCCCCCCGUGACUUUCCC-AUUCAUUUCCCGCCCAUUU-GCUGGCUGUCCAACAGCCAUUGUCUGUUGUUCCAGCA ....((((((((.((....................-...........((......-))((((((.....))))))..))))))))))...... ( -19.60, z-score = -2.44, R) >droSec1.super_0 520927 91 + 21120651 UUUCAGCAGCAGCAUUUUCCCCCCGUGACUUUCCC-AUUCAUUUCCCGCCCAUUU-GCUAGCUGUCCAACAGCCAUUGUCUGUUGUUCCAUCC .....(((((((((..........((((.......-..))))............)-))).))))).(((((((....).))))))........ ( -15.65, z-score = -3.18, R) >droYak2.chr3L 20535547 93 - 24197627 UUCCAGCAGCAGCAUUUUCCCCCCAUGACUUUCCCCAUUCAUUUACCGCCCAUUUUGCUGGCUGUCCGACAACCAUUGUCUGUUGUUCCAGCA ......((((((............((((..........))))............))))))((((...((((((........)))))).)))). ( -16.05, z-score = -1.56, R) >droEre2.scaffold_4784 19964500 91 - 25762168 UUCCACCAGCAGCACUUUCCCCCCGUGACUUUCCC-AUUCAUUUCCCGCCCAUUU-GCUGGCUGUCCGACAGCCAUUGUCUGUUGUUCCAGCA ......((((((.((....................-...........((......-))((((((.....))))))..))))))))........ ( -17.50, z-score = -1.87, R) >droAna3.scaffold_13337 3240688 80 + 23293914 UUUCAGCAGC--CCCCCAUACCCCAGGA--UCCCUGACU--UUUCCUGCCAUUUU--CCGACCGUUC--CAGCCAUUGUCUGUU---CCAGCA .....((...--...........(((((--.........--..))))).......--..(((.((..--.....)).)))....---...)). ( -8.30, z-score = 0.24, R) >consensus UUUCAGCAGCAGCACUUUCCCCCCGUGACUUUCCC_AUUCAUUUCCCGCCCAUUU_GCUGGCUGUCCAACAGCCAUUGUCUGUUGUUCCAGCA ...((((((((((((.........)))................................(((((.....))))).))).))))))........ ( -9.74 = -10.68 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:07 2011