| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,221,624 – 8,221,715 |
| Length | 91 |
| Max. P | 0.531556 |
| Location | 8,221,624 – 8,221,715 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 77.64 |
| Shannon entropy | 0.35619 |
| G+C content | 0.60033 |
| Mean single sequence MFE | -24.75 |
| Consensus MFE | -16.94 |
| Energy contribution | -16.38 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.531556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8221624 91 - 24543557 -UCCGUGCCGGAGUCCUUUGGCAAAG---CCCCACACCUCACCCCUGCCCGAACCCAUCACCACGCCCCUGGCGGCGGUGCAGAUAAUAAAAUAU -....(((((((....)))))))...---...............(((((((............((((...)))).))).))))............ ( -22.12, z-score = -0.17, R) >droSim1.chr3L 7685253 93 - 22553184 -UCCGUGCCAGAGUCCUUUGGCAAGGACUCCCCACACCUCA-CCCUCCCCGCCCCCAUCACCACGCCCCUGGCGGCGGUGCAGAUAAUAAAAUAU -...(((...((((((((....))))))))..)))......-..((.((((((.(((............))).))))).).))............ ( -26.70, z-score = -2.28, R) >droSec1.super_0 507466 92 - 21120651 UCCUGUGCCAGAGUCCUUUGGCAAGG---CACCACACCUCACCCCUCCCCGCCCCCAUCACCACGCCCCUGGCGGCGGUGCAGAUAAUAAAAUAU .(((.(((((((....))))))))))---...............((.((((((.(((............))).))))).).))............ ( -24.20, z-score = -1.05, R) >droYak2.chr3L 20521774 73 + 24197627 UCCGCAGGCGAAGUCCUUUGGCAAAG----------------------CCCCCCACUUUGCCACGCCCCUGGCGGCGGUGCAGAUAAUAAAAUAU .((((.((((((((.....(((...)----------------------))....)))))))).((((...))))))))................. ( -26.00, z-score = -1.88, R) >consensus _CCCGUGCCAGAGUCCUUUGGCAAAG___CCCCACACCUCA_CCCUCCCCGCCCCCAUCACCACGCCCCUGGCGGCGGUGCAGAUAAUAAAAUAU ......((((((....))))))....................................((((.((((...))))..))))............... (-16.94 = -16.38 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:06 2011