| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,214,791 – 8,214,856 |
| Length | 65 |
| Max. P | 0.991769 |
| Location | 8,214,791 – 8,214,856 |
|---|---|
| Length | 65 |
| Sequences | 7 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 71.12 |
| Shannon entropy | 0.58606 |
| G+C content | 0.37278 |
| Mean single sequence MFE | -14.27 |
| Consensus MFE | -6.80 |
| Energy contribution | -6.90 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.50 |
| SVM RNA-class probability | 0.991769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8214791 65 + 24543557 AUUUAUUGUGGUCUAUUAA--AAUAGGCAAACAGGCGAAUGGUAAUGGAGCGGAAUGACUUGAUAAU ..(((((.((.(((((((.--.((..((......))..))..))))))).)).)))))......... ( -14.30, z-score = -2.87, R) >dp4.chrXR_group3a 1373655 67 - 1468910 AUCUAGGUCGGUUUCAUGGCUAAUUGAAACGAACCCCAACUUAAAUCAAGCGAAAUCGGUUGGCACA .....(((..((((((........))))))..)))((((((....((....))....)))))).... ( -15.10, z-score = -1.07, R) >droAna3.scaffold_13337 3217765 57 + 23293914 CUUUAUUCUGGGCCAUUAA--AAUGGGCAG--------GUUGUAAUGGGGCAGAAUAAGCCGACUGU .(((((((((..((((((.--(((......--------))).))))))..)))))))))........ ( -14.90, z-score = -0.95, R) >droEre2.scaffold_4784 19944070 65 - 25762168 AUUUAUUGUGGUCUAUUAA--AAUAGGCAAUUGGGCAAAUGCUAAUGGAGCGGAAUGACUUGAUAAU ..(((((.((.(((((((.--.((..((......))..))..))))))).)).)))))......... ( -14.00, z-score = -2.27, R) >droYak2.chr3L 20514367 59 - 24197627 AUUUAUUGUGGUCUAUUAA--AAUAGGCAAAU------AUGCUAAUGGAGCGGAAUGACUUGAUAAU ..(((((.((.(((((((.--.(((......)------))..))))))).)).)))))......... ( -12.60, z-score = -2.62, R) >droSec1.super_0 500792 65 + 21120651 AUUUAUUGUGGUCUAUUAA--AAUAGGCAAACAGGCGAAUGGUAAUGGAGCGGGAUGACUUGAUAAU ..(((((.((.(((((((.--.((..((......))..))..))))))).)).)))))......... ( -14.70, z-score = -2.86, R) >droSim1.chr3L 7678534 65 + 22553184 AUUUAUUGUGGUCUAUUAA--AAUAGGCAAACAGGCGAAUGGUAAUGGAGCGGAAUGACUUGAUAAU ..(((((.((.(((((((.--.((..((......))..))..))))))).)).)))))......... ( -14.30, z-score = -2.87, R) >consensus AUUUAUUGUGGUCUAUUAA__AAUAGGCAAACAGGCGAAUGGUAAUGGAGCGGAAUGACUUGAUAAU ..(((((.((.(((((((........................))))))).)).)))))......... ( -6.80 = -6.90 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:06 2011