| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,212,916 – 8,213,009 |
| Length | 93 |
| Max. P | 0.624371 |
| Location | 8,212,916 – 8,213,009 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 65.77 |
| Shannon entropy | 0.60387 |
| G+C content | 0.54437 |
| Mean single sequence MFE | -13.17 |
| Consensus MFE | -10.03 |
| Energy contribution | -10.03 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.06 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8212916 93 - 24543557 GUGCCGUAAAAGGCGAAUGGCACACAUGACACCCACAUUCCAUCCACUUUC-------CACCCACCGCAUCACAACAGUCCUAAGCCGUAUCCGUAUCCA------------ .((((......)))).(((((......(((.....................-------...................)))....)))))...........------------ ( -10.00, z-score = 1.02, R) >droSim1.chr3L 7676695 97 - 22553184 GUGCCGUAAAAAGCGAAUGGCACACAUGACACCCACAUGCCACCCACUUGCCAA---CCACCCACCUCAUCACAACAGUCCUAAGCCGUAUCCGUAUCCA------------ (((((((.........))))))).((((.......))))...............---...........................................------------ ( -11.00, z-score = 0.58, R) >droYak2.chr3L 20512438 100 + 24197627 GUGCCGUAAAAAGCGAACGGCACACAUGACACCCACAUGGCA--CGCCACCCAA----CGACCACCUCAUCACAACAGUCCUAAGCCGUAUCCGUCUCCGUAUCCA------ (((((((.........)))))))....(((......(((((.--((........----))...........((....)).....)))))....)))..........------ ( -17.30, z-score = -0.29, R) >droEre2.scaffold_4784 19942233 112 + 25762168 GUGCCGUAAAAAGAGAACGGCACACAUGACACCCACAUGCCACCCACACACACAGCCCAGCCCACCUCAUCACAACAGUCGUAAGCCGUAUCCGCAUCCGCAUCCGUAUCCA (((((((.........))))))).((((.......))))................................((.((.(.(....)).))....((....))....))..... ( -14.70, z-score = 0.33, R) >droAna3.scaffold_13337 3215974 84 - 23293914 GUGCCGUAAAAAGCGAACGGCACACAUGAAGCACCCA-------CACCUUC---------GCCAUGACCUUCAAGCAGGCCUAAUCCGUAUCCAUAUUCG------------ (((((((.........)))))))((..((((......-------...))))---------(((.((.(......)))))).......))...........------------ ( -16.30, z-score = -1.10, R) >droWil1.scaffold_180698 2156171 79 - 11422946 GUGCCGUAAAACGUGAAAGGCACACAUGACACCCCC--------CAC-----------AACCCGCCUACCCACUGCGAAUUCCAUUCCCAUCCAUCCU-------------- (((((.............))))).............--------...-----------....(((.........))).....................-------------- ( -9.72, z-score = -0.92, R) >consensus GUGCCGUAAAAAGCGAACGGCACACAUGACACCCACAUGCCA__CACCUUC_______CACCCACCUCAUCACAACAGUCCUAAGCCGUAUCCGUAUCCG____________ (((((((.........)))))))......................................................................................... (-10.03 = -10.03 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:05 2011