| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,211,758 – 8,211,856 |
| Length | 98 |
| Max. P | 0.843454 |
| Location | 8,211,758 – 8,211,856 |
|---|---|
| Length | 98 |
| Sequences | 10 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 68.44 |
| Shannon entropy | 0.64984 |
| G+C content | 0.66355 |
| Mean single sequence MFE | -41.64 |
| Consensus MFE | -19.97 |
| Energy contribution | -20.75 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.69 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8211758 98 + 24543557 ------------UAGGCGGCGGUGUAGGCAGCUGGGAAGGCGGCGCUGUGGGCCACCGAGUUGGCG-GUGUAGCUGGAGGCGUAGGGAGCCACGUAGGCGGCACUGCCCAC ------------...(.((((((((..((.(((.....)))(((.((.((.(((.((.(((((...-...))))))).))).)).)).)))......)).))))))))).. ( -42.00, z-score = 0.15, R) >droSim1.chr3L 7675514 98 + 22553184 ------------UAGGCGGCGGUGUAGGCAGCUGGGAAGGCGGCGCUGUGGGCCACCGAGUGGGCG-GUGUAGCUGGAGGCGUAGGGAGCCACGUAGGCGGCACUGCCCAC ------------....(((.(((.(((((.((((......))))))).)).))).))).(((((((-((((.(((....((((.(....).)))).))).))))))))))) ( -48.40, z-score = -1.87, R) >droSec1.super_0 497750 98 + 21120651 ------------UAGGCGGCGGUGUAGGCAGCUGGGAAGGCGGCGCUGUGGGCCACCGAGUGGGCG-GUGUAGCUGGACGCGUAGGGAGCCACGUAGGCGGCACUGCCCAC ------------....(((.(((.(((((.((((......))))))).)).))).))).(((((((-((((.(((....((((.(....).)))).))).))))))))))) ( -47.30, z-score = -1.23, R) >droYak2.chr3L 20511211 92 - 24197627 ------------------GCGGUGUAGGCAGCUGGGAAGGCGGCGCUGUGGGCCACCGAGUGGGCG-GUGUAGCUGGAGGCGUAGGGAGCCACGUAGGCGGCACUGCCCAC ------------------.((((((.(((.((((......)))))))....).))))).(((((((-((((.(((....((((.(....).)))).))).))))))))))) ( -44.50, z-score = -1.35, R) >droEre2.scaffold_4784 19941032 98 - 25762168 ------------UAGGCGGCGGUGUAGGCAGCUGGGAAGGCGGCGCUGUGGGCCACCGAGUGGGCG-GAGUAGCUGGAGGCGUAGGGAGCCACGUAGGCAGCACUGCCCAC ------------....(((.(((.(((((.((((......))))))).)).))).))).(((((((-(.((.(((....((((.(....).)))).))).)).)))))))) ( -43.70, z-score = -0.99, R) >dp4.chrXR_group3a 1370412 98 - 1468910 ------------UAGGCAGCAGUGUACGCAGCAGGAAAGGCGGCGCUGUGGGCAACCGAGUGGGCG-GUGAAGCUGGAAGCAUAAGGUGCCACAUAGGCGGCGCUUCCCAC ------------......(((((((.(((..........))))))))))((....))..(((((.(-(((..(((.(..((((...))))..)...)))..)))).))))) ( -36.50, z-score = -0.05, R) >droWil1.scaffold_180698 2154628 98 + 11422946 ------------AUCGGGGCGGUGUAUGCAGCUGGGAAGGCAGCACUGUGGGCUACCUGGUGAGCG-UUGAAGCUGGAGGCAUAGGGAGCCACAUAGGCGGCACUACCUAC ------------....(((..((((.(((.((((......)))).(((((((((.((((.(.(((.-.....))).).....)))).)))).))))))))))))..))).. ( -40.00, z-score = -1.65, R) >droGri2.scaffold_15110 20970119 110 - 24565398 UAGGCAGCAGCAAUCGGUGCAGUGUAGGCAGCGGGGAAGGCGGCGCUGUGGGCGACCUGGUUAGCG-GUAUAGCUGGACGCGUAGGGCGCCACAUAGGCGGCGCUGCCAAC ..((((((.....(((.(((.......))).))).....((.((.(((((((((.((((((((((.-.....))))...)).)))).)))).))))))).))))))))... ( -50.60, z-score = -1.80, R) >apiMel3.GroupUn 381980445 98 - 399230636 ------------UAGCUGAGGGCGGAUAGAGCUGGGGCGGCGGCCAACUUGGCAAUAGGAGCUGCGUGUGCAGC-GUAUGCGAGAGGGGCUGUGUGUGUGGCGUAUGCGAG ------------..((..(((((.......)))..(((....)))..))..)).......((..((..((((((-.(...(....)).))))))..))..))......... ( -33.80, z-score = 0.21, R) >triCas2.ChLG7 13117177 87 + 17478683 ----------------------UAGCUACAGGGGCGGCGUAAGCUACUGGGGCUACAGCAGGAGCC-ACAGCUUUGACAGCUAAAGGUUCCUUGUGAACGAUGGCAUUGA- ----------------------((((..(((..((.......))..)))..))))..((.((((((-..((((.....))))...))))))(((....)))..)).....- ( -29.60, z-score = -1.07, R) >consensus ____________UAGGCGGCGGUGUAGGCAGCUGGGAAGGCGGCGCUGUGGGCCACCGAGUGGGCG_GUGUAGCUGGAGGCGUAGGGAGCCACGUAGGCGGCACUGCCCAC ..................(((((((..((.((.......))(((.((.((.(((.((.....(((.......))))).))).)).)).)))......)).))))))).... (-19.97 = -20.75 + 0.78)
| Location | 8,211,758 – 8,211,856 |
|---|---|
| Length | 98 |
| Sequences | 10 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 68.44 |
| Shannon entropy | 0.64984 |
| G+C content | 0.66355 |
| Mean single sequence MFE | -31.71 |
| Consensus MFE | -17.45 |
| Energy contribution | -18.78 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.53 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.843454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8211758 98 - 24543557 GUGGGCAGUGCCGCCUACGUGGCUCCCUACGCCUCCAGCUACAC-CGCCAACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUACACCGCCGCCUA------------ ((((((((((((((....))))).....................-.........((((((.......))))))......)))))))))...........------------ ( -33.80, z-score = -0.43, R) >droSim1.chr3L 7675514 98 - 22553184 GUGGGCAGUGCCGCCUACGUGGCUCCCUACGCCUCCAGCUACAC-CGCCCACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUACACCGCCGCCUA------------ ((((((.(((..((....(.(((.......))).)..))..)))-.))))))..((((((....((.((.((.......)).)))).....))))))..------------ ( -36.00, z-score = -1.13, R) >droSec1.super_0 497750 98 - 21120651 GUGGGCAGUGCCGCCUACGUGGCUCCCUACGCGUCCAGCUACAC-CGCCCACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUACACCGCCGCCUA------------ ((((((.(((..((..(((((........)))))...))..)))-.))))))..((((((....((.((.((.......)).)))).....))))))..------------ ( -38.80, z-score = -1.56, R) >droYak2.chr3L 20511211 92 + 24197627 GUGGGCAGUGCCGCCUACGUGGCUCCCUACGCCUCCAGCUACAC-CGCCCACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUACACCGC------------------ ((((((((((((((....))))).....................-.........((((((.......))))))......))))))))).....------------------ ( -33.80, z-score = -1.04, R) >droEre2.scaffold_4784 19941032 98 + 25762168 GUGGGCAGUGCUGCCUACGUGGCUCCCUACGCCUCCAGCUACUC-CGCCCACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUACACCGCCGCCUA------------ (((((((((((((....(((((....)))))....)))).))).-.))))))..((((((....((.((.((.......)).)))).....))))))..------------ ( -37.80, z-score = -1.82, R) >dp4.chrXR_group3a 1370412 98 + 1468910 GUGGGAAGCGCCGCCUAUGUGGCACCUUAUGCUUCCAGCUUCAC-CGCCCACUCGGUUGCCCACAGCGCCGCCUUUCCUGCUGCGUACACUGCUGCCUA------------ ((((((((((((((....)))))......((....))))))).)-)))......(((.((.....((((.((.......)).)))).....)).)))..------------ ( -31.80, z-score = -0.59, R) >droWil1.scaffold_180698 2154628 98 - 11422946 GUAGGUAGUGCCGCCUAUGUGGCUCCCUAUGCCUCCAGCUUCAA-CGCUCACCAGGUAGCCCACAGUGCUGCCUUCCCAGCUGCAUACACCGCCCCGAU------------ ...((..(((.....((((..(((............(((.....-.)))....(((((((.......)))))))....)))..)))))))..)).....------------ ( -26.30, z-score = -0.01, R) >droGri2.scaffold_15110 20970119 110 + 24565398 GUUGGCAGCGCCGCCUAUGUGGCGCCCUACGCGUCCAGCUAUAC-CGCUAACCAGGUCGCCCACAGCGCCGCCUUCCCCGCUGCCUACACUGCACCGAUUGCUGCUGCCUA ...((((((((.......(((((((.....(((.(((((.....-.))).....)).))).....)))))))......((.(((.......))).))...)).)))))).. ( -38.30, z-score = -1.06, R) >apiMel3.GroupUn 381980445 98 + 399230636 CUCGCAUACGCCACACACACAGCCCCUCUCGCAUAC-GCUGCACACGCAGCUCCUAUUGCCAAGUUGGCCGCCGCCCCAGCUCUAUCCGCCCUCAGCUA------------ ...((....)).........(((.......(((...-(((((....)))))......)))..((((((........)))))).............))).------------ ( -18.00, z-score = 0.46, R) >triCas2.ChLG7 13117177 87 - 17478683 -UCAAUGCCAUCGUUCACAAGGAACCUUUAGCUGUCAAAGCUGU-GGCUCCUGCUGUAGCCCCAGUAGCUUACGCCGCCCCUGUAGCUA---------------------- -..................((((.((..(((((.....))))).-)).))))....((((..(((..((.......))..)))..))))---------------------- ( -22.50, z-score = -0.51, R) >consensus GUGGGCAGUGCCGCCUACGUGGCUCCCUACGCCUCCAGCUACAC_CGCCCACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUACACCGCCGCCUA____________ (((.((((((((((....)))))...............................((((((.......))))))......))))).)))....................... (-17.45 = -18.78 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:04 2011