| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,197,651 – 8,197,759 |
| Length | 108 |
| Max. P | 0.876097 |
| Location | 8,197,651 – 8,197,759 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 52.53 |
| Shannon entropy | 0.79267 |
| G+C content | 0.50469 |
| Mean single sequence MFE | -32.45 |
| Consensus MFE | -10.05 |
| Energy contribution | -12.30 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.876097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8197651 108 + 24543557 CAUGGUGCCUCUUAUA--CGGUGCCCCACACAAUGCGUCCCCUACAGGAUGCCCUGUAUAAGUUUGCCCGCCGAACUUGAGCCGUA--AAAGGU--------AGGGUACCAUAUUCCCAG .((((((((((((.((--((((.......(((..((((((......))))))..))).((((((((.....)))))))).))))))--.)))..--------.)))))))))........ ( -39.20, z-score = -3.74, R) >droSec1.super_0 483742 116 + 21120651 CAAGGUUCCUCUCAUA--CGGUGCCCCACUCAAUACGUCCCCUACAGGGUGCCCUGUAGAAGUUUGCCCGCCGAACUUCAGACACA--AGGUGCCCCGAGCAAGGAUACAAAAUUCACAG ...(..(((((((...--.((..((.................((((((....))))))((((((((.....)))))))).......--.))..))..)))..))))..)........... ( -31.90, z-score = -1.58, R) >droYak2.chr3L 20496645 118 - 24197627 CUAAGUGCCACGAACA--AGGUGAUCCAUGCACUGUUUCUCCUACAAGGUGCCCUGUGCAAGUUGGCCCCAAGAACCUGCGACGUACAGGGUGCCCCGAUCUAGGGUACCACAUUCCCAG ....(((((..((.(.--(((.((..((.....))..)).)))....((..((((((((..((.((.........)).))...))))))))..))..).))...)))))........... ( -37.00, z-score = -0.93, R) >droMoj3.scaffold_6654 1272137 116 + 2564135 GGAGCUGCUUUAGAUCUUAGCUGGCCACUCUCAAGUGUGAGCAGUUAUAUCUUCAAUUGAAAAUAGCUUAUAAAA----AGGCGUCCGAAUCAUAUUCAUAAACGUCACCUAAUAGUCAU .((((((.....(((..((((((..(((........)))..)))))).)))(((....)))..))))))......----.(((((..((((...))))....)))))............. ( -21.70, z-score = -0.11, R) >consensus CAAGGUGCCUCUAAUA__AGGUGCCCCACACAAUGCGUCCCCUACAAGAUGCCCUGUAGAAGUUUGCCCGCAGAACUUGAGACGUA__AAGUGCCCCGAUCAAGGGUACCAAAUUCCCAG ...................(((((((................((((((....))))))((((((((.....))))))))........................))))))).......... (-10.05 = -12.30 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:01 2011