| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,149,501 – 8,149,551 |
| Length | 50 |
| Max. P | 0.747420 |
| Location | 8,149,501 – 8,149,551 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 89.54 |
| Shannon entropy | 0.14405 |
| G+C content | 0.60497 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -17.49 |
| Energy contribution | -17.27 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8149501 50 - 24543557 UCGAUCUGCCCGCUGAGAAAUGGCAGCUGGCAGGGGUGUAGUCAUCCAAA- .....(((((.((((........)))).)))))(((((....)))))...- ( -21.10, z-score = -2.71, R) >droSec1.super_0 436648 51 - 21120651 UCGAUCUGCCCGCUGACGAAUGGCAGCUGGCAGGGGCGUAGUUCCCCCAAA ......((((.((((........)))).))))((((.(.....)))))... ( -19.30, z-score = -1.05, R) >droSim1.chr3L 7615488 51 - 22553184 UCGAUCUGCCCGCUGACGAAUGGCAGCUGGCAGGGGCGUAGUUCCCCCAAA ......((((.((((........)))).))))((((.(.....)))))... ( -19.30, z-score = -1.05, R) >consensus UCGAUCUGCCCGCUGACGAAUGGCAGCUGGCAGGGGCGUAGUUCCCCCAAA .....(((((.((((........)))).)))))(((........))).... (-17.49 = -17.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:58 2011