| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,103,361 – 8,103,505 |
| Length | 144 |
| Max. P | 0.785364 |
| Location | 8,103,361 – 8,103,505 |
|---|---|
| Length | 144 |
| Sequences | 6 |
| Columns | 177 |
| Reading direction | forward |
| Mean pairwise identity | 64.04 |
| Shannon entropy | 0.66695 |
| G+C content | 0.49006 |
| Mean single sequence MFE | -49.51 |
| Consensus MFE | -20.59 |
| Energy contribution | -22.82 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8103361 144 + 24543557 -------------------------------GCAAGGCGUAUAG-GUGUAUAGCACUUGCUAAAAUUUAGA-ACUUCUUUUUCAAUUCCCGCCAAGACGGGACCACCUGUCUAGGCCAGUGCUGUGAAGCGCGCGUGGCCACAGAGCUCGGCAACCCUGCAGCCGUGCGAAAGCGAA -------------------------------....(((...(((-(.((.((((....)))).........-..................(((.(((((((....))))))).((((((((((....)))))...))))).........))).))))))..))).(((....))).. ( -50.30, z-score = -1.04, R) >droEre2.scaffold_4784 22500496 174 - 25762168 GCAAAUCCGACUGUAAGCCCCAUAAGCUAAAGCAAGCUGAAAAUCGUGCAUAGCACUUCUUAAAAUUUAGA-AUAGCUUU--CAAUACCCGCCAAGACGGGACCACCUGUCUUGGCCAGUGUUGUUAAGCGCGUGUGGCCACAGUGCUCGGCAACCCUGCAGCCGUGUGAAUGGGAA .....(((.(((((..(((.(((..(((.....((((((......((((...))))((((........)))-))))))).--((((((..(((((((((((....)))))))))))..))))))...)))..))).))).)))))((.((((.........)))).)).....))). ( -62.30, z-score = -3.36, R) >droYak2.chr3L 8691013 176 + 24197627 GCAAGUCGGAACGUAAGCCGUUUAAGCUAGUGUAAUUUAGAAAUAGUGCAAAGCACUUGCUAAAAUUUAGA-AUAGCUUUUUCGAUUUCCGCCAAGAAGUGACCACCUGUCUUGGCCAGUGUUGUUAAGCGCGUGUGGCCACAGUGCUCGGCAACCCUGCUGCCGUGCGAAUGGGAA (.(((((((((((.....)))))((((((.(.((((((((....(((((...)))))..)))))..))).)-.))))))...)))))).)(((((((.((....))...)))))))(((.(((((..((((((((....))).)))))..))))).)))...((((....))))... ( -56.50, z-score = -1.35, R) >droSec1.super_0 390781 164 + 21120651 ------------UCAAGGCGUUUAAGCUAGUGUAAGUUGAAAAUCGUGUAAAGCACUUGCUAAAAUUUAGA-AUUGCUUUUUCAAUUCCCGCCAAGUUGGGACCACCUGUCCAGGCCAGUGCUGUGAAGCGCGCGUGGCCACAGAGCUCGGCAACCCUGCAGCCGUGCGAAAGCGAA ------------....(((((((.(((.(((((....((.....))......))))).))).))))...((-((((......))))))..(((.((((.((((.....)))).((((((((((....)))))...)))))....)))).))).........))).(((....))).. ( -51.40, z-score = -0.42, R) >droSim1.chr3L 7571304 164 + 22553184 ------------UCAAGGCGUUGAAGCUAGUGUAAGUUGAAAAUCGUGUAAAGCACUUGCUAAAAUUUAGA-AUUGCUUUUUCAAUUCCCGCCAAGUUGGGACCACCUGUCCAGGCCAGUGCUGUGAAGCGCGCGUGGCCACAGAGCUCGGCAACCCUGCAGCCGUGCGAAAGCGAA ------------....((((..(((((...(.((((((.......(((.....))).......)))))).)-...)))))..).......(((.((((.((((.....)))).((((((((((....)))))...)))))....)))).))).........))).(((....))).. ( -52.34, z-score = -0.49, R) >droWil1.scaffold_180727 70944 129 + 2741493 ----------------------------------------------UCUAUCGUUCUCUUUUGUUUUCUUACACACACACUAGCACUCCCGUUUAAACGAAAC--ACUAACAAAAACAAAAGCAAAAAUGGCGCCCAAAGUCAAGCUUGGGUUACUCUCCAUGUGUGCGUGAAUGAA ----------------------------------------------....((((((.((((((((((...............(......)((((.....))))--.......)))))))))(((...((((.((((((........))))))......))))...)))).)))))). ( -24.20, z-score = -0.59, R) >consensus ______________AAG_CGUUUAAGCUAGUGUAAGUUGAAAAUCGUGUAAAGCACUUGCUAAAAUUUAGA_AUAGCUUUUUCAAUUCCCGCCAAGACGGGACCACCUGUCUAGGCCAGUGCUGUGAAGCGCGCGUGGCCACAGAGCUCGGCAACCCUGCAGCCGUGCGAAAGCGAA .............................................((((...))))(((((.........................(((((......)))))....((((...((((((((((....)))))...))))))))).((.((((.........)))).))...))))). (-20.59 = -22.82 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:58 2011