| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,100,154 – 8,100,280 |
| Length | 126 |
| Max. P | 0.878358 |
| Location | 8,100,154 – 8,100,280 |
|---|---|
| Length | 126 |
| Sequences | 5 |
| Columns | 137 |
| Reading direction | forward |
| Mean pairwise identity | 78.98 |
| Shannon entropy | 0.36375 |
| G+C content | 0.36226 |
| Mean single sequence MFE | -32.82 |
| Consensus MFE | -14.78 |
| Energy contribution | -18.82 |
| Covariance contribution | 4.04 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8100154 126 + 24543557 UCACGAUCUGAUUUCACCACUAAGUUUCUUCAUCUAAAUUUAACUG---------GUAACGCUUCGGAUAAAAGAUUUC-AGAUGUU-ACUUCGAAAGAAAUCAGAUUGUGAAAAGGUGCUUCUAGUUACUCGCCAA (((((((((((((((((((.(((((((........)))))))..))---------)).....((((((...((.(((..-.))).))-..)))))).)))))))))))))))...((((............)))).. ( -32.80, z-score = -3.02, R) >droEre2.scaffold_4784 22497395 121 - 25762168 -------------UCACGAACUGAUU--UCCAUGUAGAUUUAACUGCCUAAUAUGGUAUCGCUUUGGAUAAAAGCUUUG-AGUUGAGUACUUCGAAAGAAAUCAGAUCGUGAAAAGGUGCUCUUAGUUACUCGCCAC -------------((((((.((((((--((..((.(((((((((((((......)))...(((((.....)))))....-)))))))).)).))...)))))))).))))))...((((............)))).. ( -36.40, z-score = -3.60, R) >droYak2.chr3L 8687749 137 + 24197627 UCACGAACUGAUUUCACGCAGCAGUUGUUCCAUGUAAAUUUAACUGCCUAAUAUGAUAUUGCUUAGGAUAAUAGCUUUUGAGUUGUUUACUUCGAAAGAAAUCAGAUCGUGAAAAGAUGCUCUUAGUUACUCGCCAC ((((((.((((((((..((((((((((.............)))))))(......)....)))...(((.(((((((....)))))))...)))....)))))))).))))))......................... ( -32.52, z-score = -1.75, R) >droSec1.super_0 387537 127 + 21120651 UCACGAUCUGAUUUCACCAAUAAGUUGCUUCAUUUAAAUUUAACUG---------GUUUCGCUUUGGAUAAAAGUAUUC-AGUUGUUUACUUCGAAAGAAAUCAGAUUGUGAAAAGGUGCUUCUAGUUACUCGCCAC (((((((((((((((((((.((((((..........))))))..))---------))((((...(((((((..(....)-..)))))))...)))).)))))))))))))))...((((............)))).. ( -33.80, z-score = -3.24, R) >droSim1.chr3L 7568068 127 + 22553184 UCACGAUCUGAUUUCACCAAUAAGUUGCGUCAUCUAAAUUUAACUG---------GUUUCGCUUUGGAUAAAAGUAUUC-AGUUGUUUACUUCGAAAGAAAUCAUAUUGUGAAAAGGUGCUUCUAGUUACUCGCCAC (((((((.(((((((.((((......(((..(((...........)---------))..))).))))....(((((..(-....)..))))).....))))))).)))))))...((((............)))).. ( -28.60, z-score = -1.82, R) >consensus UCACGAUCUGAUUUCACCAAUAAGUUGCUUCAUCUAAAUUUAACUG_________GUAUCGCUUUGGAUAAAAGCUUUC_AGUUGUUUACUUCGAAAGAAAUCAGAUUGUGAAAAGGUGCUUCUAGUUACUCGCCAC (((((((((((((((.....((((((..........))))))..................(((((.....)))))......................)))))))))))))))...((((............)))).. (-14.78 = -18.82 + 4.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:56 2011