| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,078,274 – 8,078,336 |
| Length | 62 |
| Max. P | 0.923153 |
| Location | 8,078,274 – 8,078,336 |
|---|---|
| Length | 62 |
| Sequences | 7 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 64.45 |
| Shannon entropy | 0.67345 |
| G+C content | 0.44958 |
| Mean single sequence MFE | -10.46 |
| Consensus MFE | -6.11 |
| Energy contribution | -5.89 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8078274 62 + 24543557 -AAAACGAGAGUA-UAAUACGUUUUAUGGUGCU---UCUGGCACCCCUUU-ACCAACCACCCCACCCA -((((((......-.....))))))..(((((.---....))))).....-................. ( -10.00, z-score = -1.02, R) >droSim1.chr3L 7542035 61 + 22553184 -AAAACGACAGUA-UAAUACGUUUUAUGGUGCU---UCUGGCACCCCUUU-ACCAGCCACCC-ACCCA -((((((......-.....))))))..((((..---..((((........-....))))..)-))).. ( -10.30, z-score = -1.00, R) >droSec1.super_0 364671 61 + 21120651 -AAAACGACAGUA-UAAUACGUUUUAUGGUGCU---UCUGGCACCCCUUU-ACCAGCCACCC-ACCCA -((((((......-.....))))))..((((..---..((((........-....))))..)-))).. ( -10.30, z-score = -1.00, R) >droYak2.chr3L 8665536 58 + 24197627 -ACAACGAGCGUA-UAAUACGUUUUAUGGUGCU---UCUGGCACCCCUUUUGCCGGCCACCCA----- -.....(((((((-...)))))))...((((..---.((((((.......)))))).))))..----- ( -16.30, z-score = -1.77, R) >droEre2.scaffold_4784 22475858 57 - 25762168 -ACAACGACAGUA-UAAUACGUUUUAUGGUGCU---UCUGGCACCCCUUC-GCCGGCCACCCA----- -............-.............((((..---.(((((........-))))).))))..----- ( -11.80, z-score = -0.36, R) >dp4.chrXR_group8 5981184 56 + 9212921 AAAAUCAAAAGAAACAAAACAUUUUAUGGUUAUAGGUGUGGCACCCCCCC---AAGCCC--------- ..(((((.((((.........)))).)))))...(((.(((.......))---).))).--------- ( -6.70, z-score = 0.74, R) >triCas2.chrUn_36 74937 62 + 143519 -AAAGCGUAAUUU-UAAGACAGGCAACGAUUUU---CUUAAGAAUUUUUUGCUCAAUACACUAUUUA- -..((((.(((((-(((((..(....).....)---))).))))))...))))..............- ( -7.80, z-score = -1.00, R) >consensus _AAAACGACAGUA_UAAUACGUUUUAUGGUGCU___UCUGGCACCCCUUU_ACCAGCCACCC______ ...........................((((((......))))))....................... ( -6.11 = -5.89 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:55 2011