| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,599,164 – 4,599,283 |
| Length | 119 |
| Max. P | 0.743835 |
| Location | 4,599,164 – 4,599,283 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 79.33 |
| Shannon entropy | 0.37882 |
| G+C content | 0.34118 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -15.90 |
| Energy contribution | -17.70 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4599164 119 - 23011544 GUAUUAUGAGGAAAAUAAAGGUUUCUUUGGUGUGGGGUUAUUUCAUUCUAGGCAUACUUGGGAAAAAUCUUGAAUACCUAUAAAUGGGAAAUAAUUUUUCCAUGAACCCCGCAAUACUU (((((..(((((((.......)))))))...((((((((.........((((..((.(..(((....)))..).))))))...((((((((....)))))))).))))))))))))).. ( -32.60, z-score = -2.53, R) >droSim1.chr2L 4485657 119 - 22036055 GUAUUAUGAGGGAAAUAAAGGUUUCUUUGGUGUGGGGUUAUUUCAUUCCUGGCAUACUUGGGAAAAAUGUUGAAUACCUAAAAAUGGGAAGUAAUUUUUCGAUGAACCUCGGAAUACUU (((((.((((((((((....))))).....((..((((((((((.((((..(.....)..))))............((.......))))))))))))..)).....))))).))))).. ( -28.50, z-score = -1.44, R) >droSec1.super_5 2692053 119 - 5866729 GUAUUAUGAGGGAAAUAAAGGUUUCUUUGGUGUGGGGUUAUUUCAUUCCAGGCAUACUUGGGAAAAAUGUUGAAUACCUACAAAUGGGAAGUAAUUUUUCCAUGAACCUCGAAAUACUU (((((.((((((((((....))))).....((((((.....(((((((((((....))))))).......))))..)))))).((((((((....))))))))...))))).))))).. ( -34.41, z-score = -2.78, R) >droYak2.chr2L 4619991 108 - 22324452 GUAUUACGAGGGAAAUAAAUGUUUCU-----------UUCUUUCAUUCCAGGCAUACUUGGGAAAAAUGUUAAGUACCUAUAAAUGGGAAACAAUUUUUCCACAAACCAUGAAAUGCUU (((((..(((((((((....))))))-----------)))..((((..((((....))))(((((((((((.....((((....)))).))).)))))))).......))))))))).. ( -23.40, z-score = -1.69, R) >droEre2.scaffold_4929 4685165 103 - 26641161 GUAUUAUGAGGGAAGUACAUGUUUUUUUGGCGUAGGGUCAGUUCAUUCCAGGCAUAUUUGGAAAAAGUGUU----------------GAAAAAAUUUUUCCACAAAUCGUGAAAUACUU (((((((((.(((((.....(((((((..(((...((.....)).(((((((....)))))))....))).----------------.))))))).))))).....))))))..))).. ( -21.10, z-score = -0.94, R) >consensus GUAUUAUGAGGGAAAUAAAGGUUUCUUUGGUGUGGGGUUAUUUCAUUCCAGGCAUACUUGGGAAAAAUGUUGAAUACCUAUAAAUGGGAAAUAAUUUUUCCAUGAACCUCGAAAUACUU (((((...((((((((....))))))))....(((((((......(((((((....)))))))....................((((((((....)))))))).))))))).))))).. (-15.90 = -17.70 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:49 2011