| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,033,785 – 8,033,885 |
| Length | 100 |
| Max. P | 0.587782 |
| Location | 8,033,785 – 8,033,885 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 64.18 |
| Shannon entropy | 0.62946 |
| G+C content | 0.33831 |
| Mean single sequence MFE | -21.08 |
| Consensus MFE | -10.28 |
| Energy contribution | -11.08 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8033785 100 - 24543557 UGUACAAUUCACAGA--U--UUUUUUCGGUUUGCGAACAAAUUUGUUUGUCAUAAAUUUGCUGCAUUUAUUUAAUGCUGACAGAUCGUGAGCCAAAAUCGAUCA----- .............((--(--(..(((.((((..(((.(((((((((.....)))))))))..(((((.....))))).......)))..)))).)))..)))).----- ( -25.30, z-score = -2.27, R) >droYak2.chr3L 8620037 89 - 24197627 UGUACAAUUCACAGGCAU--UUUUUUGGGAUUGCAAACAAAUUUGUUUGUCAUAAAUUUGCUGCAUUUAUUUAAUGCUGACAUAUCGAUCA------------------ (((.((.......((((.--.(((.((.....(((((((....))))))))).)))..))))(((((.....)))))))))).........------------------ ( -15.60, z-score = -0.18, R) >droSec1.super_0 320983 100 - 21120651 UGUACAAUUCACAGA--U--UUUUUUCGGUUUGCGAACGAAUUUGUUUGCCAUAAAUUUGCUGCAUUUAUUUAAUGCUGACAGAGCGUGGGCCAAAAUCGAUCA----- .............((--(--(..(((.((((..((..(((((((((.....)))))))))..(((((.....)))))........))..)))).)))..)))).----- ( -23.20, z-score = -0.80, R) >droSim1.chr3L 7497718 101 - 22553184 UGUACAAUUCACAGA-UU--UUUUUUCGGUCUGCGAACGAAUUUGUUUGCCAUAAAUUUGCUGCAUUUAUUUAAUGCUGACAGAGCGUGGGCCAAAAUCGAUCA----- .............((-((--..((((.((((..((..(((((((((.....)))))))))..(((((.....)))))........))..))))))))..)))).----- ( -25.00, z-score = -1.34, R) >droVir3.scaffold_12855 5723126 109 + 10161210 UAUGAGGUUUCUAUUUUUAGACAAGGCGAUUUCUGUACGAUCUUAAUAAUUUCAAUAUUGACACAUUAAUGAGCUAUAAGCUGAAAUGUGCUUGAACUCUAUGGGAAUU .....(((((((((.......((((..((((.......))))...................((((((..(.(((.....))).)))))))))))......))))))))) ( -16.32, z-score = 0.66, R) >consensus UGUACAAUUCACAGA__U__UUUUUUCGGUUUGCGAACGAAUUUGUUUGUCAUAAAUUUGCUGCAUUUAUUUAAUGCUGACAGAGCGUGGGCCAAAAUCGAUCA_____ ...........................((((((((..(((((((((.....)))))))))..(((((.....)))))........))))))))................ (-10.28 = -11.08 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:44 2011