| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,029,066 – 8,029,135 |
| Length | 69 |
| Max. P | 0.911606 |
| Location | 8,029,066 – 8,029,135 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 81.34 |
| Shannon entropy | 0.35708 |
| G+C content | 0.44826 |
| Mean single sequence MFE | -16.28 |
| Consensus MFE | -11.27 |
| Energy contribution | -12.13 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8029066 69 - 24543557 CUGUGAUGUGCUGAUCCAUCCAAUUGUUGUGCUUCUGUGCUGAUGUAAGCAUUUCGCAGUGUCCAUUAU ((((((.(((((....((((........(..(....)..).))))..))))).)))))).......... ( -18.00, z-score = -1.89, R) >droSim1.chr3L 7493023 69 - 22553184 CUGUGAUGUGCUGAUCCAUCCAAUUGUUGUGCUCCUGUGCUGAUGUAAGCAUUUCGCAGUGUCCAUUAU ((((((.(((((....((((........(..(....)..).))))..))))).)))))).......... ( -18.00, z-score = -2.02, R) >droSec1.super_0 316345 69 - 21120651 CUGUGAUGUGCUGAUCCAUCCAAUUGUUGUGCUCCUGUGCUGAUGUAAGCAUUUCGCAGUGUCCAUUAU ((((((.(((((....((((........(..(....)..).))))..))))).)))))).......... ( -18.00, z-score = -2.02, R) >droYak2.chr3L 8615191 67 - 24197627 CUGUGAUGUGCUGAUCCAUCCAAUUGUUGUCCUUC--UGCUGAUGUAAGCAUUUCGCAGUGUACAUUAU ((((((.(((((....((((.....((.(.....)--.)).))))..))))).)))))).......... ( -15.40, z-score = -1.39, R) >droEre2.scaffold_4784 22426482 67 + 25762168 CUGUGAUGUGCUGAUCCAUCCAGUUGUUGUCCUUC--UGCUGAUGUAAGCAUUUCCCAGUGUCCAUUAU (((.((.(((((....((((.(((.(........)--.)))))))..))))).)).))).......... ( -14.70, z-score = -2.01, R) >droPer1.super_1622 6281 53 - 6674 UUCUGAUGUGCUCAGCCAUCCAAAUGUUG--------UGCUGAUGCCAGCAUCCUCUCUCU-------- ....((((((((((((((.........))--------.))))).))..)))))........-------- ( -13.60, z-score = -2.08, R) >consensus CUGUGAUGUGCUGAUCCAUCCAAUUGUUGUGCUUC__UGCUGAUGUAAGCAUUUCGCAGUGUCCAUUAU ((((((.(((((....((((.....................))))..))))).)))))).......... (-11.27 = -12.13 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:41 2011