| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,595,236 – 4,595,346 |
| Length | 110 |
| Max. P | 0.658465 |
| Location | 4,595,236 – 4,595,346 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 92.67 |
| Shannon entropy | 0.12108 |
| G+C content | 0.36342 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -16.20 |
| Energy contribution | -18.40 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4595236 110 - 23011544 AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAAUAACAAAUUAGACGAUGCCAGCCCGCUGGGAUUCUCUCGUUUUGGGAUUGUCCAUACUUCUCUGUAAA .((((((((((......))))))))))...........(((((..((((..(((.(((.((((....)))).))).)))...))))..)))))...(((......))).. ( -31.20, z-score = -3.99, R) >droSim1.chr2L 4481758 110 - 22036055 AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAAUAACAAAUUAGACGAUGCCAGCCCGCUGUGAUUCUCUCGUUUUGGGUUUGUCCAUACUUCUCUAUAAA .((((((((((......))))))))))...........((((...((((..(((.(((..(((....)))..))).)))...))))...))))................. ( -22.50, z-score = -1.99, R) >droSec1.super_5 2688189 110 - 5866729 AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAAUAACAAAUUAGACGAUGCCAGCCCGCUGUGAUUCUCUCGUUUUGGGUUUGUCCAUACUUCUCUAUAAA .((((((((((......))))))))))...........((((...((((..(((.(((..(((....)))..))).)))...))))...))))................. ( -22.50, z-score = -1.99, R) >droYak2.chr2L 4616115 102 - 22324452 AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAAUAACAAAUUAGACGAUGCCAGCCCGCUGUGAUUCUC--------GUUUUGCCCAUGCUUCUCUGUAAA .((((((((((......))))))))))....((((................((((((..((((....))).)....))--------)))).((....)).....)))).. ( -20.40, z-score = -2.06, R) >droEre2.scaffold_4929 4681353 102 - 26641161 AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAAUAACAAAUUAGACGAUGCCAGCCCGCUGUGAUUCUC--------GUUUUGUCCAUACUUCUCUGUAAG .((((((((((......)))))))))).................(((((...((.(((..(((....)))..))).))--------..)))))...(((......))).. ( -20.80, z-score = -2.46, R) >consensus AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAAUAACAAAUUAGACGAUGCCAGCCCGCUGUGAUUCUCUCGUUUUGGGUUUGUCCAUACUUCUCUGUAAA .((((((((((......))))))))))...........((((...((((..(((.(((..(((....)))..))).)))...))))...))))................. (-16.20 = -18.40 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:48 2011