| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,009,303 – 8,009,368 |
| Length | 65 |
| Max. P | 0.992350 |
| Location | 8,009,303 – 8,009,368 |
|---|---|
| Length | 65 |
| Sequences | 4 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 91.11 |
| Shannon entropy | 0.13521 |
| G+C content | 0.49768 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -19.17 |
| Energy contribution | -19.92 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.42 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.992350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8009303 65 + 24543557 GAGGGGAAGUUGGAGGUGGUAAGCAGCAG-GUG------UGUGCUGUGUAGAAUACCUGUUUUCCAGCUUUU ....((((((((((((.((((.((((((.-...------..))))))......))))...)))))))))))) ( -23.50, z-score = -3.32, R) >droSim1.chr3L 7475175 63 + 22553184 --GGGGAAGUUGGAGGUGGUAAGCAGCAG-GUG------UGUGCUGUGUAGAAUACCUGUUUUCCAGCUUUU --..((((((((((((.((((.((((((.-...------..))))))......))))...)))))))))))) ( -23.50, z-score = -3.38, R) >droSec1.super_0 301246 63 + 21120651 --GGGGAAGUUGGAGGUGGUAAGCAGCAG-GUG------UGUGCUGUGUAGAAUACCUGUUUUCCAGCUUUU --..((((((((((((.((((.((((((.-...------..))))))......))))...)))))))))))) ( -23.50, z-score = -3.38, R) >droYak2.chr3L 8597685 70 + 24197627 --GGGGAAGGUGGAGGUGGUAAGCAGGUGUGUGCUGUGCUGUGCUGUGUAGAAUACCUGUUUUCCAGCUUUU --.........((((.(((.((((((((((...(((..(......)..))).)))))))))).))).)))). ( -27.10, z-score = -3.61, R) >consensus __GGGGAAGUUGGAGGUGGUAAGCAGCAG_GUG______UGUGCUGUGUAGAAUACCUGUUUUCCAGCUUUU ....((((((((((((.((((.((((((.............))))))......))))...)))))))))))) (-19.17 = -19.92 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:38 2011