| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,986,063 – 7,986,171 |
| Length | 108 |
| Max. P | 0.602415 |
| Location | 7,986,063 – 7,986,171 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 76.08 |
| Shannon entropy | 0.35324 |
| G+C content | 0.60047 |
| Mean single sequence MFE | -24.69 |
| Consensus MFE | -17.31 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7986063 108 - 24543557 UGGGGUCCCAAAUCCCCCCUUCUACCCGCUCCUAACUCCCCCCCCACGGCAGGGUCAACGGCCCACUCGCCGUGCUCCAAUGCUAUUAUAUGUGACCAUCUGCCGUUU .((((........))))............................(((((((((((((((((......)))))((......)).........)))))..))))))).. ( -33.60, z-score = -3.44, R) >droSim1.chr3L 7458226 86 - 22553184 ---------------UGGGACCCCCUC-CUCCUAACCCCC------GGGCAGGGUCAACGGCCCACUCCCCUUGCUCCAAUGCUAUUAUAUGCGACCAUCUGCCGUUU ---------------(((((.......-.)))))......------.(((((((((...((..((.......))..))...((........))))))..))))).... ( -21.00, z-score = 0.29, R) >droSec1.super_0 278425 85 - 21120651 ----------------UGGGAACCCCC-CUCCUAACCCCC------UGGCAGGGUCAACGGCCCACUCCCCUUGCUCCAAUGCUAUUAUAUGUGGCCAUCUGCCGUUU ----------------.(((.....))-)...........------.(((((((....)((((.((.......((......))........)))))).)))))).... ( -22.26, z-score = -0.10, R) >droEre2.scaffold_4784 22387922 84 + 25762168 ----------------CCCAAACACCC-CUCCUGACCCCC-------GGCAGGGUCAACGGCCCACUCCCCGUGCUCCAGUGCUAUUAUAUCUGACCAUCUGCCGUUU ----------------...........-...........(-------((((((((((((((........))))((......)).........)))))..))))))... ( -21.90, z-score = -2.18, R) >consensus ________________CCCAAACACCC_CUCCUAACCCCC_______GGCAGGGUCAACGGCCCACUCCCCGUGCUCCAAUGCUAUUAUAUGUGACCAUCUGCCGUUU ...............................................(((((((((.((((........))))((......))..........))))..))))).... (-17.31 = -17.62 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:36 2011