| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,975,150 – 7,975,245 |
| Length | 95 |
| Max. P | 0.909568 |
| Location | 7,975,150 – 7,975,245 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 98.53 |
| Shannon entropy | 0.02542 |
| G+C content | 0.33895 |
| Mean single sequence MFE | -16.22 |
| Consensus MFE | -16.42 |
| Energy contribution | -16.18 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.44 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7975150 95 + 24543557 UAUCUAUUUAUUAUUUAACUCGACUUCCUAUCAAUUUAUUCGUAGUGUAGCCAGAAGUUUGGCAACGCUGCAUUUACAAAUUUCAUUCACGUGUA .........................................(((((((.(((((....))))).)))))))........................ ( -16.70, z-score = -1.79, R) >droSim1.chr3L 7449776 95 + 22553184 CAUCUAUUUAUUAUUUAACUCGACUUCCUAUCAAUUUAUUCGUAGUGUAGCCAGAAGUUUGGCAACGCUGCAUUUACAAAUUUCAUUCACGUGUA .........................................(((((((.(((((....))))).)))))))........................ ( -16.70, z-score = -1.84, R) >droSec1.super_0 269916 95 + 21120651 CAUCUAUUUAUUAUUUAACUCGACUUCCUAUCAAUUUAUUCGUAGUGUAGCCAGAAGUUUGGCAACGCUGCAUUUACAAAUUUCAUUCACGUGUA .........................................(((((((.(((((....))))).)))))))........................ ( -16.70, z-score = -1.84, R) >droYak2.chr3L 8564806 95 + 24197627 CAUCUAUUUAUUAUUUAACUCGACUUCCUAUCAAUUUAUUCGUGGUGUAGCCAGAAGUUUGGCAACGCUGCAUUUACAAAUUUCAUUCACGUGUA .........................................(..((((.(((((....))))).))))..)........................ ( -15.50, z-score = -0.92, R) >droEre2.scaffold_4784 22379507 95 - 25762168 CAACUAUUUAUUAUUUAACUCGACUUCCUAUCAAUUUAUUCGUGGUGUAGCCAGAAGUUUGGCAACGCUGCAUUUACAAAUUUCAUUCACGUGUA .........................................(..((((.(((((....))))).))))..)........................ ( -15.50, z-score = -0.81, R) >consensus CAUCUAUUUAUUAUUUAACUCGACUUCCUAUCAAUUUAUUCGUAGUGUAGCCAGAAGUUUGGCAACGCUGCAUUUACAAAUUUCAUUCACGUGUA .........................................(((((((.(((((....))))).)))))))........................ (-16.42 = -16.18 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:32 2011