| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,953,664 – 7,953,715 |
| Length | 51 |
| Max. P | 0.995067 |
| Location | 7,953,664 – 7,953,715 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 72.76 |
| Shannon entropy | 0.47317 |
| G+C content | 0.55594 |
| Mean single sequence MFE | -10.52 |
| Consensus MFE | -9.78 |
| Energy contribution | -9.62 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.76 |
| SVM RNA-class probability | 0.995067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7953664 51 - 24543557 CCUCCUUAGCCCCAAUUUA---AGCCCCC--UUUUUGCUGCGCCUCUGUGUAGCAC ...................---.......--....((((((((....)))))))). ( -10.40, z-score = -2.85, R) >droSim1.chr3L 7428368 51 - 22553184 CAUCCGCAGAGCCAAUUUA---AGCCCCC--UUUUUGCUGCGCCUCUGUGCAGCAC ...................---.......--....((((((((....)))))))). ( -12.40, z-score = -1.56, R) >droSec1.super_0 248592 51 - 21120651 CAUCCUCAGCCCCAAUUUA---AGCCCCC--UUUUUGCUGCGCCUCUGUGCAGCAC ...................---.......--....((((((((....)))))))). ( -12.40, z-score = -3.04, R) >droYak2.chr3L 8542473 52 - 24197627 -UUCCUAAGCCCCAAUUUA---AGCCCCCCUUUUUCGCUGCGCCUCUGUGCAGCAC -..................---..............(((((((....))))))).. ( -12.10, z-score = -3.58, R) >droMoj3.scaffold_6680 8483773 56 - 24764193 CCUCAUUAACACCUGCUCAAAUAGCUCCCCCUUUGCGCCUAUGCCCUGAACGGCUU ..............((.((((..........)))).))....(((......))).. ( -5.30, z-score = 0.37, R) >consensus CAUCCUCAGCCCCAAUUUA___AGCCCCC__UUUUUGCUGCGCCUCUGUGCAGCAC ....................................(((((((....))))))).. ( -9.78 = -9.62 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:30 2011