| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,952,047 – 7,952,150 |
| Length | 103 |
| Max. P | 0.703994 |
| Location | 7,952,047 – 7,952,150 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.61 |
| Shannon entropy | 0.52364 |
| G+C content | 0.40904 |
| Mean single sequence MFE | -19.84 |
| Consensus MFE | -15.59 |
| Energy contribution | -15.45 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.45 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7952047 103 - 24543557 ------------ACCCCUUCGCCCUUC-UUUUCCUACCAAGCCAUACCAUUUGAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU ------------.......(((((...-.....((((((...((.......))...(((.(((((....))))).)))))))))((((((.........))))))...)))))... ( -18.40, z-score = -0.38, R) >droSim1.chr3L 7426748 105 - 22553184 ----------ACACCCCUUCGCCUUUC-UUUUCCUGCCAAGCCAUACCAUUUGAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU ----------((((((((.........-.....((((((...((.......))...(((.(((((....))))).)))))))))((((((.........)))))))).)))))).. ( -20.10, z-score = -0.52, R) >droSec1.super_0 247005 105 - 21120651 ----------ACACCCCUUCGCCUUUC-UUUUCCUACCAAGCCAUACCAUUUGAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU ----------((((((((.........-.....((((((...((.......))...(((.(((((....))))).)))))))))((((((.........)))))))).)))))).. ( -20.10, z-score = -0.83, R) >droYak2.chr3L 8540795 102 - 24197627 -------------AUCCGUUGGCAGUC-UUUUGCAGCCAAGCCAUACCAUUUGAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU -------------.....(((((.((.-....)).)))))..............(((((((((((.((.((((.((((...........)))).)))))))))))).))))).... ( -21.40, z-score = 0.10, R) >droEre2.scaffold_4784 22354980 102 + 25762168 -------------ACCCGUUGGCAGUC-UUUUCCAGCCAAGCCAUACCAUUUGAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU -------------.....(((((....-.......)))))..............(((((((((((.((.((((.((((...........)))).)))))))))))).))))).... ( -20.50, z-score = 0.18, R) >droAna3.scaffold_13337 7227522 116 + 23293914 GUAUAUCUAUCUAUCCCCCGAGCUGUCUUUUUCCUGCCAAGCCAUACCAUUUGAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU ..((((((((..(((......((((...(((((.(((((...((.......))...(((.(((((....))))).)))))))))))))..)))).....)))....)))))))).. ( -20.90, z-score = -0.09, R) >dp4.chrXR_group8 7673564 80 + 9212921 ------------------------------------GUGCCGGGCUCCAUUGUAGCCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU ------------------------------------(..(((((((.......))))).((((((.((.((((.((((...........)))).))))))))))))...))..).. ( -19.30, z-score = -0.49, R) >droPer1.super_24 1514380 80 - 1556852 ------------------------------------GUGCCGGGCUCCAUUGUAGCCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU ------------------------------------(..(((((((.......))))).((((((.((.((((.((((...........)))).))))))))))))...))..).. ( -19.30, z-score = -0.49, R) >droWil1.scaffold_180955 128979 107 + 2875958 -------CUUCUCAAUUGCUGCUGCUGCUGCUGUUGAUGCU--CCUCCAUUGUAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU -------....(((((.((.((....)).)).)))))....--...........(((((((((((.((.((((.((((...........)))).)))))))))))).))))).... ( -24.10, z-score = -0.62, R) >droVir3.scaffold_13049 20772456 81 - 25233164 -----------------------------------GCUCUCGGCUCUCAGCGUAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU -----------------------------------.......((.....))...(((((((((((.((.((((.((((...........)))).)))))))))))).))))).... ( -16.60, z-score = -0.35, R) >droMoj3.scaffold_6680 16282772 80 + 24764193 ------------------------------------GUACGGACUCUCAGCGUAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU ------------------------------------.((((.........))))(((((((((((.((.((((.((((...........)))).)))))))))))).))))).... ( -16.80, z-score = -0.49, R) >droGri2.scaffold_15110 12803455 85 + 24565398 ------------------------------GAGCUGGUAGC-UCUCUCAUCGUAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU ------------------------------((((.....))-))..........(((((((((((.((.((((.((((...........)))).)))))))))))).))))).... ( -20.60, z-score = -1.42, R) >consensus _______________CC___G_C__UC_UUUUCCUGCCAAGCCAUACCAUUGGAACCCGUAAAAUACACAUUUUCUGGUGGUAGAAAAUCCAGCAAAUUGAUUUUAGUGGGUGUUU ......................................................(((((((((((.((.((((.((((...........)))).)))))))))))).))))).... (-15.59 = -15.45 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:29 2011