| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,592,353 – 4,592,444 |
| Length | 91 |
| Max. P | 0.599772 |
| Location | 4,592,353 – 4,592,444 |
|---|---|
| Length | 91 |
| Sequences | 10 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 96.53 |
| Shannon entropy | 0.06882 |
| G+C content | 0.34836 |
| Mean single sequence MFE | -17.91 |
| Consensus MFE | -16.62 |
| Energy contribution | -16.39 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4592353 91 + 23011544 UUUGACUUUU-GAUUGACGUAAUUUCUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCGGUCGCACAU ..........-((((((((((.....)))((..((.((((....)))).))..))........................)))))))...... ( -14.40, z-score = -0.16, R) >droSim1.chr2L 4478866 91 + 22036055 UUUGACUUUU-GAUUGACGUAAUUUCUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCGGGCGCACAU ..........-...............(((((((((....((((.((((....(((......))).......)))).)))))))))))))... ( -17.10, z-score = -0.97, R) >droYak2.chr2L 4613167 91 + 22324452 UUUGACUUUU-GAUUGACGUAAUUUCUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCGGGCGCACAU ..........-...............(((((((((....((((.((((....(((......))).......)))).)))))))))))))... ( -17.10, z-score = -0.97, R) >droEre2.scaffold_4929 4678407 91 + 26641161 UUUGACUUUU-GAUUGACGUAAUUUCUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCGGGCGCACAU ..........-...............(((((((((....((((.((((....(((......))).......)))).)))))))))))))... ( -17.10, z-score = -0.97, R) >droAna3.scaffold_12943 1791180 91 - 5039921 UAUGACUUUU-GAUUGACGUAAUUUCUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCAGGCGCACAU ..........-...............(((((((((....((((.((((....(((......))).......)))).)))))))))))))... ( -17.90, z-score = -1.25, R) >dp4.chr4_group3 440541 91 - 11692001 UUUGACUUUU-GAUUGACGUAAUUUUUGCGCUUGAUAUUCAGUUGAAUUUCUUGUAUUUCCACAUUUAACCGUUUUGGUGUCAGGCGCACAU ..........-...............((((((((((((((.(((((((...............))))))).)....)))))))))))))... ( -19.06, z-score = -1.38, R) >droPer1.super_8 1479818 91 - 3966273 UUUGACUUUU-GAUUGACGUAAUUUUUGCGCUUGAUAUUCAGUUGAAUUUCUUGUAUUUCCACAUUUAACCGUUUUGGUGUCAGGCGCACAU ..........-...............((((((((((((((.(((((((...............))))))).)....)))))))))))))... ( -19.06, z-score = -1.38, R) >droVir3.scaffold_12963 8504669 92 - 20206255 UUUGACUUUUUGAUUGACGUAAUUUUUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUAUUUUGGUGUCAGGCGCACAU ..........................(((((((((....((((.((((....(((......))).......)))).)))))))))))))... ( -17.70, z-score = -1.87, R) >droMoj3.scaffold_6500 11957870 92 - 32352404 UUUGACUUUUUGAUUGACGUAAUUUUUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCAGGCGCACAU ..........................(((((((((....((((.((((....(((......))).......)))).)))))))))))))... ( -18.00, z-score = -1.50, R) >droGri2.scaffold_15126 3143990 92 - 8399593 UUUGACUUUUUGAUUGACGUAAUUUUUGCGCUUGAUAUUCAGUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCAGGCGUACAU ..........................((((((((((((((((((((((...............)))))))))....)))))))))))))... ( -21.66, z-score = -2.62, R) >consensus UUUGACUUUU_GAUUGACGUAAUUUCUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCAGGCGCACAU ..........................(((((((((((((.............(((......)))............)))))))))))))... (-16.62 = -16.39 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:47 2011