Locus 6579

Sequence ID dm3.chr3L
Location 7,948,692 – 7,948,753
Length 61
Max. P 0.615354
window9056

overview

Window 6

Location 7,948,692 – 7,948,753
Length 61
Sequences 5
Columns 67
Reading direction reverse
Mean pairwise identity 71.61
Shannon entropy 0.48758
G+C content 0.44301
Mean single sequence MFE -16.62
Consensus MFE -7.00
Energy contribution -7.76
Covariance contribution 0.76
Combinations/Pair 1.25
Mean z-score -1.82
Structure conservation index 0.42
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.26
SVM RNA-class probability 0.615354
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 7948692 61 - 24543557
UUUCUGGCGAAAUUUAGUGGCGGAAAACUCCUGCCAUAAAGUCAAUGCCCUUGCA------UUGCCA
.....(((...((((.((((((((....))).))))).)))).(((((....)))------))))). ( -19.20, z-score =  -2.47, R)
>droSim1.chr3L 7423411 61 - 22553184
UUUCUGGCGAAAUUUAGUGGCGGAAAGGUCCUGCCAUAAAGUCAAUGCCCUGGCA------UUGCCA
.....(((...((((.(((((((.......))))))).)))).(((((....)))------))))). ( -21.20, z-score =  -1.89, R)
>droSec1.super_0 242731 61 - 21120651
UUUCUGACGAAAUUUAGUGGCGGAAAGGUCCUGCCAUAAAGUCAAUGCCCUGGCA------UUGCCA
((((....))))....(((((((.......)))))))...(.((((((....)))------))).). ( -18.30, z-score =  -1.59, R)
>droEre2.scaffold_4784 22351530 61 + 25762168
UUUCCGUCGAAAUUUAGUGUCGGAAAGGUCCUGCCAUAAAGUCAAUGCCCUGGCA------UUGCCA
((((((.((........)).))))))((.....)).....(.((((((....)))------))).). ( -17.20, z-score =  -2.32, R)
>droWil1.scaffold_181089 11925032 67 - 12369635
CUUAUCCCGUUAUUGCGUGAUACUUAAGUCUAAUAUUAUCGUUGUUUUUUUUUCAAGCAAUUUGCUG
........((.(((((.(((.....(((..((((......))))..)))...))).)))))..)).. (  -7.20, z-score =  -0.82, R)
>consensus
UUUCUGGCGAAAUUUAGUGGCGGAAAGGUCCUGCCAUAAAGUCAAUGCCCUGGCA______UUGCCA
...........((((.(((((((.......))))))).))))........(((((.......))))) ( -7.00 =  -7.76 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:28 2011