| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,884,531 – 7,884,583 |
| Length | 52 |
| Max. P | 0.897268 |
| Location | 7,884,531 – 7,884,583 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 95.19 |
| Shannon entropy | 0.07801 |
| G+C content | 0.37500 |
| Mean single sequence MFE | -7.60 |
| Consensus MFE | -6.71 |
| Energy contribution | -6.71 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7884531 52 + 24543557 ACUAGUUUUUCCCAACUAUCUGAGAUUUUUCCCAAUCGAAAACUAGACCAGU .(((((((((..((......)).((((......)))))))))))))...... ( -8.20, z-score = -2.10, R) >droEre2.scaffold_4784 22295718 52 - 25762168 ACUAGUUUUUCCCAACUGUCUGAGAUUUUCCCCAAUCGAAAACUAGACCAGC .(((((((((..((......)).((((......)))))))))))))...... ( -8.20, z-score = -1.81, R) >droSec1.super_0 188117 52 + 21120651 ACUAGUUUUUCCCAACUAUCUUAGAUUUUUCCCAAUCGAAAACUAGACCAGU .(((((((((.............((((......)))))))))))))...... ( -6.71, z-score = -2.10, R) >droSim1.chr3L 7367485 52 + 22553184 ACUAGUUUUUCCCAACUAUCAGAGAUUUUUCCCAAUCGAAAACUAGACCAGU .(((((((((.....(.....).((((......)))))))))))))...... ( -7.30, z-score = -2.11, R) >consensus ACUAGUUUUUCCCAACUAUCUGAGAUUUUUCCCAAUCGAAAACUAGACCAGU .(((((((((.............((((......)))))))))))))...... ( -6.71 = -6.71 + -0.00)
| Location | 7,884,531 – 7,884,583 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 95.19 |
| Shannon entropy | 0.07801 |
| G+C content | 0.37500 |
| Mean single sequence MFE | -12.30 |
| Consensus MFE | -11.44 |
| Energy contribution | -11.12 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.897268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7884531 52 - 24543557 ACUGGUCUAGUUUUCGAUUGGGAAAAAUCUCAGAUAGUUGGGAAAAACUAGU ((((((....((..(((((((((....)))))....))))..))..)))))) ( -12.50, z-score = -1.93, R) >droEre2.scaffold_4784 22295718 52 + 25762168 GCUGGUCUAGUUUUCGAUUGGGGAAAAUCUCAGACAGUUGGGAAAAACUAGU ((((((....((..((((((..((.....))...))))))..))..)))))) ( -14.50, z-score = -2.29, R) >droSec1.super_0 188117 52 - 21120651 ACUGGUCUAGUUUUCGAUUGGGAAAAAUCUAAGAUAGUUGGGAAAAACUAGU ((((((....((..(((((((((....)))....))))))..))..)))))) ( -10.50, z-score = -1.50, R) >droSim1.chr3L 7367485 52 - 22553184 ACUGGUCUAGUUUUCGAUUGGGAAAAAUCUCUGAUAGUUGGGAAAAACUAGU ((((((....((..(((((((((......)))..))))))..))..)))))) ( -11.70, z-score = -1.65, R) >consensus ACUGGUCUAGUUUUCGAUUGGGAAAAAUCUCAGAUAGUUGGGAAAAACUAGU ((((((....((..((((((.((......))...))))))..))..)))))) (-11.44 = -11.12 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:21 2011