| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,861,240 – 7,861,307 |
| Length | 67 |
| Max. P | 0.589485 |
| Location | 7,861,240 – 7,861,307 |
|---|---|
| Length | 67 |
| Sequences | 9 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 74.54 |
| Shannon entropy | 0.48621 |
| G+C content | 0.43298 |
| Mean single sequence MFE | -14.32 |
| Consensus MFE | -6.78 |
| Energy contribution | -6.89 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7861240 67 + 24543557 UAGAUAAACAGGGGCAAACA-UCAG-CGCAGCGCAAUCAAAUUGAUUGGCAAGCUGUCUCCCCAAUAUA------- ..........((((......-.(((-(...((.(((((.....)))))))..))))...))))......------- ( -20.00, z-score = -2.85, R) >droAna3.scaffold_13337 10656007 66 + 23293914 UAGAUAAACAGGC-CCAACA-UCGA-CGCACCACAAUCAAUUUGAUUGGCAAGCUGUCCCCCCAAUUUA------- .............-......-..((-(((....(((((.....)))))....)).)))...........------- ( -9.20, z-score = -0.44, R) >droEre2.scaffold_4784 22272628 67 - 25762168 UCGAUAAACAGGGGCAAACA-UCAG-CGCAGCACAAUCAAAUUGAUUGGCAACCUGUCUCCCCAAUUUA------- ..........((((......-.(((-.(..((.(((((.....)))))))..))))...))))......------- ( -16.20, z-score = -2.02, R) >droYak2.chr3L 8459655 67 + 24197627 UAGAUAAACAGGGGCCAACA-UCAG-CGCAGCACAAUCAAAUUGAUUGGCAACCUGUCUCCCCAAUUUA------- ..........((((......-.(((-.(..((.(((((.....)))))))..))))...))))......------- ( -16.20, z-score = -1.83, R) >droSec1.super_0 168196 67 + 21120651 UAGAUAAACAGGGGCAAACA-UCAG-CGCAGCGCAAUCAAAUUGAUUGGCAACCUGUCUCCCCAAUUUA------- ..........((((......-.(((-.(..((.(((((.....)))))))..))))...))))......------- ( -16.20, z-score = -1.52, R) >droSim1.chr3L 7347413 67 + 22553184 UAGAUAAACAGGGGCAAACA-UCAG-CGCAGCGCAAUCAAAUUGAUUGGCAACCUGUCUCCCCAAUUUA------- ..........((((......-.(((-.(..((.(((((.....)))))))..))))...))))......------- ( -16.20, z-score = -1.52, R) >droMoj3.scaffold_6680 8387789 67 + 24764193 UUAAAAAUAAAUAGCAAUUACUCAA-UGCCGCACAAUCAAUUUGAUUGGCAAGCUGUCCGACUAUCUA-------- ..........(((((.....(....-.)..((.(((((.....)))))))..)))))...........-------- ( -10.00, z-score = -0.97, R) >droVir3.scaffold_13049 20675550 73 + 25233164 CAAAUAAUAA--AACAAAUAGUCAA-CGGCGCACAAUCAAUUUGAUUGGCAAGCUGUCCGCCUGUCCGCCUAUCUA ..........--.............-.((((..(((((.....)))))(((.((.....)).))).))))...... ( -13.90, z-score = -1.19, R) >droGri2.scaffold_15110 12719044 62 - 24565398 ----AAACAA--AACAAACAAGCGACUGCCGCACAAUCAAUUUGAUUGGCAAACUGUCCGCCUAUCUG-------- ----......--.........(((((....((.(((((.....))))))).....)).))).......-------- ( -11.00, z-score = -1.70, R) >consensus UAGAUAAACAGGGGCAAACA_UCAG_CGCAGCACAAUCAAAUUGAUUGGCAACCUGUCUCCCCAAUUUA_______ ..............................((.(((((.....))))))).......................... ( -6.78 = -6.89 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:15 2011