| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,858,506 – 7,858,597 |
| Length | 91 |
| Max. P | 0.598318 |
| Location | 7,858,506 – 7,858,597 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.07 |
| Shannon entropy | 0.44267 |
| G+C content | 0.47408 |
| Mean single sequence MFE | -29.20 |
| Consensus MFE | -13.27 |
| Energy contribution | -13.92 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7858506 91 - 24543557 ACAGAAACAACUCUCACGAUCUGGGGUUCGGUUGUU-UUUUUUU---UCCAGCGA-----UCGGAUCACAUGGUCAGGUCGGGGAUUUAGUGGCUGUCUU------------ ((((..((((.((((.((((((((((((((((((((-.......---...)))))-----)))))))......)))))))))))).)).))..))))...------------ ( -30.40, z-score = -2.95, R) >droSim1.chr3L 7344730 93 - 22553184 AGAGAAACAACUCUCACGAUCUGCGGUUCGGUUGUUGUUGUUUU--UUCCAGCGA-----UCGGAUCACAUGGUCAGGUCGGGGAUUUAGUGGCUGUCUU------------ ..((..((((.((((.(((((((((((((((((((((..(....--)..))))))-----))))))).....).))))))))))).)).))..)).....------------ ( -30.10, z-score = -1.87, R) >droSec1.super_0 165527 93 - 21120651 ACAGAAACAACUCUCACGAUCUGCGGUUCGGUUGUUGUUUUUUU--UUCCAGCGA-----UCGGAUCACAUGGUCAGGUCGGGGAUUUAGUGGCUGUCUU------------ ((((..((((.((((.(((((((((((((((((((((.......--...))))))-----))))))).....).))))))))))).)).))..))))...------------ ( -32.40, z-score = -3.29, R) >droYak2.chr3L 8456907 100 - 24197627 ACAGAAACAACUCUCACGAUCUGCGCUUCGGUUGAUUUUUUUUUUGUUUUCCCCAAGCGAUCGGAUCACAUGGUCAGGUCGGAGAUUUAGUGGCUGUCUU------------ ((((..((((.((((.((((((.(((((.((..((............))..)).)))))....((((....)))))))))))))).)).))..))))...------------ ( -29.30, z-score = -1.73, R) >droEre2.scaffold_4784 22269844 96 + 25762168 ACAGAAACAACUCUCACGAUUCGGGGCUCGGUUGUU-UUUUUUU--CCCCAGCGAUCGGGUCGGAUCACAUGGUCAGGUUGGGGA-UUAGUGGCUGUCUU------------ ((((..((((..((((((((((((.(((.((..(..-.....).--.)).)))..))))))))((((....))))....))))..-)).))..))))...------------ ( -28.30, z-score = -0.51, R) >droAna3.scaffold_13337 10653444 99 - 23293914 CUGAAACCGAGUCUUACGCUCUCU--CUGGUUCGCUAUUUUUU------UUACGA-----UCGAAUCACAUGGUCAGGUCGGAAAUAUCGCAGCUGUCCCAGAUAGGUACAU .....(((((((.....))))..(--((((..((((......(------((.(((-----((..(((....)))..))))).)))......))).)..)))))..))).... ( -24.70, z-score = -0.96, R) >consensus ACAGAAACAACUCUCACGAUCUGCGGUUCGGUUGUU_UUUUUUU__UUCCAGCGA_____UCGGAUCACAUGGUCAGGUCGGGGAUUUAGUGGCUGUCUU____________ ((((..((((.((((.((((((..............................(((.....)))((((....)))))))))))))).)).))..))))............... (-13.27 = -13.92 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:14 2011