| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,851,387 – 7,851,481 |
| Length | 94 |
| Max. P | 0.846699 |
| Location | 7,851,387 – 7,851,481 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 67.09 |
| Shannon entropy | 0.55883 |
| G+C content | 0.36483 |
| Mean single sequence MFE | -20.23 |
| Consensus MFE | -10.59 |
| Energy contribution | -9.53 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7851387 94 + 24543557 -------UACACCCUAACACAUACAUAUGUACAUA---UAUCCAUGUAUGUG-UGAAAACUUAUUUGCUUUGGCAUUU----UCUGAAAUGUCGCAGGCAGCGAA--AAAU -------.........((((((((((..(((....---)))..)))))))))-)..........((((((((((((((----....)))))))).))))))....--.... ( -23.40, z-score = -2.49, R) >droSim1.chr3L 7337619 90 + 22553184 -------UACACCCUAGCACAUACCUAUCUA-------UAUCCAUGUAUGUG-GGAAAACUUAUUUGCUUUGGCAUUU----UCUGAAAUGUCGCAGGCAGCGAA--AAAU -------.........((.....(((((.((-------((....)))).)))-))..........(((((((((((((----....)))))))).)))))))...--.... ( -20.20, z-score = -1.25, R) >droSec1.super_0 158491 90 + 21120651 -------UACAUCCUAGCACAUACGUAUCUA-------UAUCCAUGUAUGUG-GGAAAACUUAUUUGCUUUGGCAUUU----UCUGAAAUGUCGCAGGCAGCGAA--AAAU -------....(((...(((((((((.....-------.....)))))))))-)))........((((((((((((((----....)))))))).))))))....--.... ( -22.50, z-score = -1.98, R) >droAna3.scaffold_13337 10645269 97 + 23293914 -------AACCAAAUAAUACAUAAAUAUAUCCAUGUGCCAUCAGUACCUAAC-CGAAAACUUAUUUGCUUUGGCGUAU----UCUGAAAUGUCGCAGUCACCGAA--AAAU -------..........................((((.(((((((((((((.-((((......))))..)))).))).----.))))..)).)))).........--.... ( -10.30, z-score = 0.42, R) >droPer1.super_24 1420467 111 + 1556852 UAUCUCUAUAUACAUAUCGUGCAUAUAUCCAUGUAUAUCUGCAGCACCUAAAACGAAAACUUAUUUGCUUUGGCAUUUCAUUUCGGAAAUGUCGCAGGCAGCAUUUCGAAU ..................((((((((((....)))))).....))))......(((((......(((((((((((((((......))))))))).))))))..)))))... ( -22.50, z-score = -1.32, R) >dp4.chrXR_group8 7581277 111 - 9212921 UAUCUCUAUAUACAUAUCGUGCAUAUAUCCAUGUAUAUCUGCAGCACCUAAAACGAAAACUUAUUUGCUUUGGCAUUUCAUUUCGGAAAUGUCGCAGGCAGCAUUUCGAAU ..................((((((((((....)))))).....))))......(((((......(((((((((((((((......))))))))).))))))..)))))... ( -22.50, z-score = -1.32, R) >consensus _______AACAACAUAACACAUACAUAUCUA__UA___CAUCAAUACAUAAG_CGAAAACUUAUUUGCUUUGGCAUUU____UCUGAAAUGUCGCAGGCAGCGAA__AAAU ..................((((.....................))))..................(((((((((((((........)))))))).)))))........... (-10.59 = -9.53 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:13 2011