| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,822,747 – 7,822,854 |
| Length | 107 |
| Max. P | 0.739683 |
| Location | 7,822,747 – 7,822,854 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 82.90 |
| Shannon entropy | 0.31364 |
| G+C content | 0.42775 |
| Mean single sequence MFE | -24.06 |
| Consensus MFE | -17.28 |
| Energy contribution | -16.52 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7822747 107 + 24543557 GCGAGCCAAUAUACUUGGCGAUUCCUCGUUGCAAAGAUACAUUUGCAAAUGUAUCUACAUUUUGAAUUCCAUUUCCUAUUCAAUUCGAACCGUCGGCGACGUCAGUG ..(((((((.....))))).......((((((..(((((((((....)))))))))....((((((((..((.....))..))))))))......)))))))).... ( -26.10, z-score = -2.11, R) >droSim1.chr3L 7309700 107 + 22553184 GCAAGCCAAUUUACUUGGAGAUUCCUCGAUGCAAAGAUACAUUGGCAAAUGUAUCUACAUUUCGAAUUCCAUUUCCUAUUCAAUUCGAACCGUCGGCGACGUCAGCG ((...((((.....)))).(((((.((((((...(((((((((....)))))))))....((((((((..((.....))..)))))))).)))))).)).))).)). ( -27.90, z-score = -2.70, R) >droSec1.super_0 129272 107 + 21120651 GCAAGCCAAUAUACUUGGAGAUUCCUCGAUACAAAGAUACAUUUGCAAAUGUAUCUAUAUUUCGAAUUCCAUUUCCUAUUCAAUUCGAACCGUCGGCGACGUCAGUG ....(((..........(((....)))(((....(((((((((....)))))))))....((((((((..((.....))..))))))))..)))))).......... ( -22.90, z-score = -1.90, R) >droYak2.chr3L 8419977 92 + 24197627 ---------------CCGCGAUACCGCAGUGCAAAGAUACAUUUGCAAAUGUAUCUACAUUCUGAGUUCCAUUUCCUAUUCAAUGCGAAACGUCGGCGACGUCAGUG ---------------..(((....)))..((((.(((((((((....)))))))))......(((((..........))))).))))..(((((...)))))..... ( -20.10, z-score = -0.51, R) >droEre2.scaffold_4784 22233820 107 - 25762168 AUCCACAAAUCCACUGCGCGAUUCCGCAGUGCAAAGAUACAUUUGCGAAUGUAUUUACAUUUUGAGUUCCAUUUCCUAUUCAAUUCGAAACGUCGGCGACGUCAGCG ...........(((((((......)))))))...(((((((((....)))))))))...(((((((((..((.....))..))))))))).(.((....)).).... ( -23.30, z-score = -0.95, R) >consensus GCAAGCCAAUAUACUUGGCGAUUCCUCGAUGCAAAGAUACAUUUGCAAAUGUAUCUACAUUUUGAAUUCCAUUUCCUAUUCAAUUCGAACCGUCGGCGACGUCAGUG .................(((....)))...((..(((((((((....)))))))))....((((((((..((.....))..))))))))..(.((....)).).)). (-17.28 = -16.52 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:13 2011