| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,776,566 – 7,776,630 |
| Length | 64 |
| Max. P | 0.995004 |
| Location | 7,776,566 – 7,776,630 |
|---|---|
| Length | 64 |
| Sequences | 3 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 96.35 |
| Shannon entropy | 0.05346 |
| G+C content | 0.31250 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -13.52 |
| Energy contribution | -13.30 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.56 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.76 |
| SVM RNA-class probability | 0.995004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7776566 64 + 24543557 CAAUUUAUAUAUUUUUUUGCCUACACUGCGAAGAAGUAGAGCUAAGUUGGAACCAUAUAAAACA (((((((..(((((((((((.......)))))))))))....)))))))............... ( -13.20, z-score = -2.73, R) >droSim1.chr3L 7271108 64 + 22553184 CAAUUUAUAUAUUUUUUUGCCUACACUGCGAAGAAGUAGAGCUAAGUUGGAAGCAUAAAAAACA (((((((..(((((((((((.......)))))))))))....)))))))............... ( -13.20, z-score = -2.13, R) >droSec1.super_0 90499 64 + 21120651 CAAUUUAUAUAUUUUUUUGCCUACACUGCAAAGAAGUAGAGCUAAGUUGGAACCAUACAAAACA (((((((..(((((((((((.......)))))))))))....)))))))............... ( -13.50, z-score = -2.81, R) >consensus CAAUUUAUAUAUUUUUUUGCCUACACUGCGAAGAAGUAGAGCUAAGUUGGAACCAUAAAAAACA (((((((..(((((((((((.......)))))))))))....)))))))............... (-13.52 = -13.30 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:07 2011