| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,773,897 – 7,773,996 |
| Length | 99 |
| Max. P | 0.935236 |
| Location | 7,773,897 – 7,773,996 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 70.57 |
| Shannon entropy | 0.63635 |
| G+C content | 0.49771 |
| Mean single sequence MFE | -32.85 |
| Consensus MFE | -21.14 |
| Energy contribution | -19.59 |
| Covariance contribution | -1.54 |
| Combinations/Pair | 1.65 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.935236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7773897 99 - 24543557 ---------AUUAAUUCUA---UUGUAUUUUUUAGGCCCACUACUUAAGGGCUUUGGCUCUAAGCGGUCUUGGCCGACUGGAGGAGGCUUUGUACAACGGCUUUUUGGCCA ---------..........---((((((.....(((((..((.....(((((....))))).((((((....)))).))..))..))))).)))))).((((....)))). ( -30.70, z-score = -1.46, R) >droSim1.chr3L_random 347537 99 - 1049610 ---------AUUAAUUAUA---UUGUAUUUUUUAGGCCCACUACCUAAGGGCUUUGGCUCUGAGCGGUCUUGGCCGACUGGAGGAGGCUUUGUACAACGGCUUUUUGGCCA ---------..........---((((((.....(((((..((.((..(((((....))))).((((((....)))).))))))..))))).)))))).((((....)))). ( -33.30, z-score = -2.02, R) >droSec1.super_0 87788 99 - 21120651 ---------AUUAAUUCUA---UUGCAUUUUUUAGGCCCACUACUUGAGGGCUUUGGCUCUGAGCGGUCUUGGUCGACUGGAGGAGGCUUUGUACAACGGCUUUUUGGCCA ---------..........---.((((......((((((.(.....).)))))).(.((((...(((((......)))))..)))).)..))))....((((....)))). ( -28.10, z-score = -0.55, R) >droYak2.chr3L 8375467 99 - 24197627 ---------AUUUAUUUUA---UUGCAUUUUCCAGGCCCACUACCUGCGUGCUUUGGCCUUGAGCGGUCUUGGCCGAUUGGAGGAGGCUUUGUACAACGGCUUUUUGGCCA ---------..........---.((((......(((((..((.((..((.(((..((((......))))..)))))...))))..)))))))))....((((....)))). ( -30.40, z-score = -0.66, R) >droEre2.scaffold_4784 22191584 99 + 25762168 ---------AUGAAUUUUA---UGGCACUUUUCAGGCCCACUACUUGCGGGCUUUGGCUUUGAGCGGUCUUGGCCGAUUGGAGGAGGCUUUGUACAACGGCUUUUUGGCCA ---------..........---.(((.((((((.(((((.(.....).)))))((((((..((....))..))))))...))))))))).........((((....)))). ( -32.10, z-score = -1.14, R) >droAna3.scaffold_13337 10573570 102 - 23293914 ---------AUUAAUUUCAAACUAUUAUCUUUCAGGCCCACUAUCUGAGAGCUUUGGCUUUGAGCGGCCUGGGUCGGUUGGAGGAGGCUUUGUACAAUGGCUUUUUGGCCA ---------.....................((((((((......((.(((((....))))).)).))))))))..(((..(((..((((.........)))))))..))). ( -28.70, z-score = -0.10, R) >dp4.chrXR_group8 7499188 111 + 9212921 GGCUGCUAUAAUGAGGUAUUAUCGCUUUCCCAUAGGCGCACUACUUGCGGGCCUUGGCUCUGAGUGGUCUGGGUCGACUGGAGGAUGCCUUGUACAAUGGCUUCUUGGCCA (((((((((.(..(((((((..(((((......)))))..(((((((.((((....)))))))))))((..(.....)..)).)))))))..)...))))).....)))). ( -39.30, z-score = -0.75, R) >droPer1.super_24 1336636 111 - 1556852 GGCUGCUAUAAUGAGGUAUUAUCGCUUUCCCGUAGGCGCACUACUUGCGGGCCUUGGCUCUGAGUGGUCUGGGUCGACUGGAGGAUGCCUUGUACAAUGGCUUCUUGGCCA (((((((((.(..(((((((......((((.((.(((.(((((((((.((((....))))))))))))..).))).)).)))))))))))..)...))))).....)))). ( -40.50, z-score = -0.94, R) >droWil1.scaffold_180727 2613525 101 - 2741493 ---------AUUUAUUUU-UACUCUUCUCUUUUAGGCUCACUAUCUGCGGGCUUUGGCUUUGAGUGGUUUGGGUAGACUGGAAGAGGCAUUAUAUAAUGGUUUUCUUGCCA ---------.........-..((((((((((((((((.((((....((........))....))))))))))).)))...))))))...........((((......)))) ( -22.80, z-score = -0.29, R) >droMoj3.scaffold_6680 8280445 110 - 24764193 GCUACAGUUGCUCAUAUUC-AACUCUCCCUUGCAGGCUCACUAUCUGCGUGCCUUGGCCCUGAGCGGCUUGGGCCGCUUGGAGGAGGCGUUGCUCAAUGGCUUCUUGGCCA ((.(((((((........)-)))).......(((((.......)))))))))..((((((..((((((....))))))..)(((((.((((....)))).))))).))))) ( -41.30, z-score = -0.49, R) >droGri2.scaffold_15110 12626282 109 + 24565398 --GCUAAUCGUUAUGCUCUCAAUUUUCAAAAACAGGCUCACUAUUUGCGCGCUUUGGCGCUCAGCGGCUUGAGCCAUCUGGAGGAGGCAUUGUUCAAUGCCUUUCUGGCCA --((..........))..................((((((....(((.((((....)))).))).....))))))..(..(((.(((((((....))))))))))..)... ( -32.80, z-score = -0.46, R) >droVir3.scaffold_13049 20572972 101 - 25233164 ----GCUAUAAUGA------AUUCUCUUGUGACAGGCACACUAUUUGCGCGCCUUGGCGCUGAGCGGCUUGGGCCGACUGGAGGAUGCCCUGUACAAUGGCUUUCUGGCCA ----((((....((------(..((.(((((.((((((..((......((((....))))(.((((((....)))).)).)))..)).))))))))).))..))))))).. ( -34.20, z-score = -0.60, R) >consensus _________AUUAAUUUUA_A_UUGUAUCUUUCAGGCCCACUACUUGCGGGCUUUGGCUCUGAGCGGUCUGGGCCGACUGGAGGAGGCUUUGUACAAUGGCUUUUUGGCCA .................................(((((..((.((.....(((..((((......))))..))).....))))..)))))........((((....)))). (-21.14 = -19.59 + -1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:07 2011